Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 82.3 | 81.58 |
| PGSC0003DMT400001475 | Potato | plastid | 73.45 | 70.34 |
| PGSC0003DMT400001474 | Potato | plastid | 68.14 | 65.81 |
| PGSC0003DMT400001476 | Potato | plastid | 63.72 | 64.29 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 52.21 | 49.17 |
| KRH64261 | Soybean | nucleus | 51.33 | 47.93 |
| Bra017974.1-P | Field mustard | cytosol | 36.28 | 47.67 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 38.94 | 46.81 |
| AT5G24655.1 | Thale cress | cytosol | 36.28 | 44.57 |
| AT3G49570.1 | Thale cress | cytosol | 38.05 | 44.33 |
| Bra017975.1-P | Field mustard | cytosol | 38.05 | 44.33 |
| CDY08148 | Canola | cytosol | 36.28 | 44.09 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 37.17 | 43.3 |
| CDY08146 | Canola | cytosol | 37.17 | 43.3 |
| Bra020466.1-P | Field mustard | nucleus | 37.17 | 43.3 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 35.4 | 43.01 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 51.33 | 42.34 |
| CDY05402 | Canola | nucleus | 36.28 | 42.27 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 34.51 | 41.94 |
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 34.51 | 41.94 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 34.51 | 41.49 |
| KRH16959 | Soybean | nucleus | 42.48 | 41.03 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069515 | EnsemblPlantsGene:PGSC0003DMG400027025 | EntrezGene:102578639 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0033554 | ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | PGSC:PGSC0003DMG400027025 | RefSeq:XP_006347320.1 |
| SEG:seg | UniParc:UPI000294B0B1 | UniProt:M1CKK9 | MapMan:35.2 | : | : |
Description
UP-9A [Source:PGSC_GENE;Acc:PGSC0003DMG400027025]
Coordinates
chr6:+:53598519..53599134
Molecular Weight (calculated)
12988.6 Da
IEP (calculated)
5.369
GRAVY (calculated)
-0.734
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTIALPFW AQSKPPVGEI SGVPEAEVLR KRNEELEKEL KKSVEREEKM KEELQKTWRR LKVAEEAEER LCFQLGEFEA EAVDQARAYR ARVINLMEQH
101: SAAQKLLQSP PAS
101: SAAQKLLQSP PAS
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.