Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g113480.1.1 | Tomato | nucleus | 91.44 | 89.53 |
| PGSC0003DMT400015482 | Potato | cytosol | 70.59 | 86.84 |
| VIT_18s0001g02100.t01 | Wine grape | nucleus | 42.25 | 47.88 |
| KRH64628 | Soybean | nucleus | 40.64 | 44.44 |
| KRH53275 | Soybean | cytosol | 38.5 | 41.62 |
| AT1G77400.1 | Thale cress | nucleus | 45.45 | 36.64 |
| CDX88369 | Canola | nucleus, plastid | 43.85 | 35.5 |
| CDY41785 | Canola | plastid | 39.04 | 35.1 |
| Bra008305.1-P | Field mustard | cytosol | 40.64 | 34.23 |
| CDX87519 | Canola | nucleus, plastid | 42.78 | 34.04 |
| CDY40887 | Canola | cytosol | 30.48 | 32.02 |
| CDY38350 | Canola | cytosol | 29.95 | 31.46 |
| Bra015670.1-P | Field mustard | cytosol, plastid | 42.78 | 16.63 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400063159 | EnsemblPlantsGene:PGSC0003DMG400024564 | EntrezGene:102597828 | PANTHER:PTHR35466 | PANTHER:PTHR35466:SF2 | PGSC:PGSC0003DMG400024564 |
| RefSeq:XP_006344972.1 | SEG:seg | UniParc:UPI000295D74F | UniProt:M1CA59 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024564]
Coordinates
chr3:-:53410985..53412068
Molecular Weight (calculated)
21346.2 Da
IEP (calculated)
10.601
GRAVY (calculated)
-0.886
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIEADESFK QAGVIPFKWE IRPGVPKIQH SQPPLIKQEV AENNRSRPIP ETPRRLKPPP AAEFNFQQPI EEPRTRSFRS APRARSDRHV LNLLTRPAMG
101: VASDWCFPSP LLKRTTEKNT KKKKSHKTGP EPEPDYLSDL ETVSRWSVSS RKSISPFHDS LSSSFSSRES SPRRPVSDTD WVGFALF
101: VASDWCFPSP LLKRTTEKNT KKKKSHKTGP EPEPDYLSDL ETVSRWSVSS RKSISPFHDS LSSSFSSRES SPRRPVSDTD WVGFALF
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.