Factsheet for Solyc03g113480.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc04g010070.2.1
Solyc05g054980.2.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77400.1	Solyc03g096760.1.1	AT5G24660.1	21798944
AT1G77400.1	Solyc03g096770.1.1	AT5G24660.1	21798944
AT1G77400.1	Solyc03g096780.1.1	AT5G24660.1	21798944
AT1G77400.1	Solyc06g072990.1.1	AT5G24660.1	21798944
AT1G77400.1	Solyc04g010070.2.1	AT5G28900.1	21798944
AT1G77400.1	Solyc05g054980.2.1	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063159	Potato	nucleus	89.53	91.44
VIT_18s0001g02100.t01	Wine grape	nucleus	41.36	47.88
KRH64628	Soybean	nucleus	39.79	44.44
KRH53275	Soybean	cytosol	37.7	41.62
AT1G77400.1	Thale cress	nucleus	45.55	37.5
CDX88369	Canola	nucleus, plastid	43.98	36.36
CDY41785	Canola	plastid	39.27	36.06
Bra008305.1-P	Field mustard	cytosol	41.36	35.59
CDX87519	Canola	nucleus, plastid	42.93	34.89
CDY38350	Canola	cytosol	30.89	33.15
CDY40887	Canola	cytosol	30.89	33.15
Bra015670.1-P	Field mustard	cytosol, plastid	42.93	17.05

Protein Annotations

EnsemblPlants:Solyc03g113480.1.1	EnsemblPlantsGene:Solyc03g113480.1	PANTHER:PTHR35466	PANTHER:PTHR35466:SF2	SEG:seg	UniParc:UPI0002767C1F
UniProt:K4BKK0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3:-:63611314..63611889

Molecular Weight (calculated)

21800.7 Da

IEP (calculated)

10.705

GRAVY (calculated)

-0.841

Length

191 amino acids

Sequence
(BLAST)

001: MEIEADESFK QAGVIPFRWE IRPGVPKLQH SQLPLIKHDD PHVAAENNRS RPIPETPRRL KPPPAADFNF QQPIEEPRTR SFRSAPRARS DRHVLNLLTR
101: PAMGVASDWC FPSPLLKRTT EKNTKKKKSH QIGPRPEPDY LSDLETVSRW SVSSRKSISP FHDSLSSSFS SRESSPRRPV SDADWVGFAL F

Best Arabidopsis Sequence Match ( AT1G77400.1 )
(BLAST)

001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF

Arabidopsis Description

At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.