Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38350 | Canola | cytosol | 92.7 | 92.7 |
| Bra008305.1-P | Field mustard | cytosol | 93.26 | 74.77 |
| CDY41785 | Canola | plastid | 68.54 | 58.65 |
| CDX88369 | Canola | nucleus, plastid | 75.84 | 58.44 |
| CDX87519 | Canola | nucleus, plastid | 76.4 | 57.87 |
| AT1G77400.1 | Thale cress | nucleus | 73.6 | 56.47 |
| VIT_18s0001g02100.t01 | Wine grape | nucleus | 29.21 | 31.52 |
| PGSC0003DMT400015482 | Potato | cytosol | 26.4 | 30.92 |
| Solyc03g113480.1.1 | Tomato | nucleus | 33.15 | 30.89 |
| PGSC0003DMT400063159 | Potato | nucleus | 32.02 | 30.48 |
| KRH64628 | Soybean | nucleus | 27.53 | 28.66 |
| KRH53275 | Soybean | cytosol | 27.53 | 28.32 |
Protein Annotations
| EnsemblPlants:CDY40887 | EnsemblPlantsGene:GSBRNA2T00071920001 | InterPro:DUF688 | PANTHER:PTHR35466 | PANTHER:PTHR35466:SF2 | PFAM:PF05097 |
| ProteinID:CDY40887 | ProteinID:CDY40887.1 | SEG:seg | UniParc:UPI0004EDFB0F | UniProt:A0A078HSR1 | MapMan:35.2 |
Description
BnaCnng09780DBnaCnng09780D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSR1]
Coordinates
chrLK032483:+:237556..238224
Molecular Weight (calculated)
19632.5 Da
IEP (calculated)
11.877
GRAVY (calculated)
-0.597
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MPIIVIDDSF KRPGTVPFSW EIRPGVPKTP PGNTPLLQLQ PPNYLSPLRL KPLSHSQPFL PPALSPPSSS FISKSKSRSL SPLAPSFSTP SKLKPPPPSH
101: SSFYSSGPSF RSSPRAFSER WQLNRTRSES DPRPDFAFAG LGCFPTPKFR LRKNKSSGGL RKTGSRLERA EWGGFGLF
101: SSFYSSGPSF RSSPRAFSER WQLNRTRSES DPRPDFAFAG LGCFPTPKFR LRKNKSSGGL RKTGSRLERA EWGGFGLF
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
Arabidopsis Description
At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.