CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92626
KRG97048
KRG97049
KRH16959
KRH34156
KRH53667
KRH64261
KRH68797

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77400.1	KRH16959	AT5G24660.1	21798944
AT1G77400.1	KRH53667	AT5G24660.1	21798944
AT1G77400.1	KRH64261	AT5G24660.1	21798944
AT1G77400.1	KRG92626	AT5G28900.1	21798944
AT1G77400.1	KRG97048	AT5G28900.1	21798944
AT1G77400.1	KRG97049	AT5G28900.1	21798944
AT1G77400.1	KRH34156	AT5G28900.1	21798944
AT1G77400.1	KRH68797	AT5G28900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53275	Soybean	cytosol	88.3	87.28
PGSC0003DMT400015482	Potato	cytosol	39.77	44.74
VIT_18s0001g02100.t01	Wine grape	nucleus	42.69	44.24
PGSC0003DMT400063159	Potato	nucleus	44.44	40.64
Solyc03g113480.1.1	Tomato	nucleus	44.44	39.79
CDY41785	Canola	plastid	37.43	30.77
CDX88369	Canola	nucleus, plastid	40.35	29.87
CDX87519	Canola	nucleus, plastid	40.35	29.36
AT1G77400.1	Thale cress	nucleus	39.77	29.31
CDY38350	Canola	cytosol	28.66	27.53
CDY40887	Canola	cytosol	28.66	27.53
Bra008305.1-P	Field mustard	cytosol	35.09	27.03
Bra015670.1-P	Field mustard	cytosol, plastid	38.6	13.72

Protein Annotations

EMBL:ACUP02002770	EnsemblPlants:KRH64628	EnsemblPlantsGene:GLYMA_04G246900	EntrezGene:102661655	InterPro:DUF688	PANTHER:PTHR35466
PANTHER:PTHR35466:SF2	PFAM:PF05097	ProteinID:KRH64628	ProteinID:KRH64628.1	SEG:seg	UniParc:UPI00023BF5F0
UniProt:I1JZ31	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:51419477..51420550

Molecular Weight (calculated)

19076.7 Da

IEP (calculated)

11.043

GRAVY (calculated)

-0.544

Length

171 amino acids

Sequence
(BLAST)

001: MGAVSDHDGD SFKKAGAVPF KWEVKPGLPI VQQKLHHQKL ESPSLKLRPP PPAGAYLLSP EEPRTRSFRS TPRVRSDRWR FERPLLARAE SVSSGCFFSP
101: VLRRLQRRKK VKVPKRVVEE DYTSELETLG RWSLSSTKSL SPFSVASTAS SSVASSPRPV SDAEWAGFGL F

Best Arabidopsis Sequence Match ( AT1G77400.1 )
(BLAST)

001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF

Arabidopsis Description

At1g77400 [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.