Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64261 | Soybean | nucleus | 80.83 | 80.17 |
| Solyc03g096780.1.1 | Tomato | nucleus | 53.33 | 56.64 |
| PGSC0003DMT400001476 | Potato | plastid | 52.5 | 56.25 |
| Solyc03g096760.1.1 | Tomato | plastid | 51.67 | 55.36 |
| PGSC0003DMT400001474 | Potato | plastid | 52.5 | 53.85 |
| Bra017974.1-P | Field mustard | cytosol | 37.5 | 52.33 |
| PGSC0003DMT400069515 | Potato | cytosol | 49.17 | 52.21 |
| KRH16959 | Soybean | nucleus | 50.83 | 52.14 |
| PGSC0003DMT400001475 | Potato | plastid | 50.0 | 50.85 |
| AT3G49570.1 | Thale cress | cytosol | 40.83 | 50.52 |
| CDY05402 | Canola | nucleus | 40.0 | 49.48 |
| Bra020466.1-P | Field mustard | nucleus | 40.0 | 49.48 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 46.67 | 49.12 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 38.33 | 48.94 |
| Solyc03g096770.1.1 | Tomato | nucleus | 46.67 | 48.7 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 39.17 | 48.45 |
| AT5G24655.1 | Thale cress | cytosol | 36.67 | 47.83 |
| CDY08148 | Canola | cytosol | 36.67 | 47.31 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 36.67 | 47.31 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 36.67 | 47.31 |
| Bra009783.1-P | Field mustard | cytosol, nucleus, plastid | 36.67 | 47.31 |
| AT3G49580.1 | Thale cress | cytosol, nucleus, plastid | 36.67 | 46.81 |
| CDY08146 | Canola | cytosol | 36.67 | 45.36 |
| Bra017975.1-P | Field mustard | cytosol | 36.67 | 45.36 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 49.17 | 43.07 |
Protein Annotations
| EMBL:ACUP02003480 | EnsemblPlants:KRH53667 | EnsemblPlantsGene:GLYMA_06G139300 | EntrezGene:100813653 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0033554 | ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | ProteinID:KRH53667 |
| ProteinID:KRH53667.1 | SEG:seg | UniParc:UPI0002339FCC | UniProt:I1KB44 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr6:-:11363910..11364932
Molecular Weight (calculated)
13696.5 Da
IEP (calculated)
5.083
GRAVY (calculated)
-0.578
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLTMMAAIG IGIKQEKKMP TVVAESELKK RNEELEKELR ESKEREEQMK RELQSAWERL RVAEEAEERL CSQLGELEAE AVYQARDYHA RIVSLMDQLS
101: RAQSLLLKTS ASSISLPSSS
101: RAQSLLLKTS ASSISLPSSS
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.