CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43174	Soybean	nucleus, plastid	95.03	95.03
Bra031870.1-P	Field mustard	mitochondrion	42.86	83.13
CDY14553	Canola	cytosol	58.39	81.74
Zm00001d017489_P001	Maize	cytosol	49.07	75.96
Zm00001d008544_P001	Maize	cytosol	47.83	74.04
VIT_12s0121g00010.t01	Wine grape	plastid	69.57	69.57
VIT_07s0141g00200.t01	Wine grape	plastid	69.57	69.57
Solyc06g072470.2.1	Tomato	plastid	66.46	65.24
CDY08809	Canola	plastid	65.84	62.72
PGSC0003DMT400069271	Potato	plastid	65.22	62.5
PGSC0003DMT400083984	Potato	plastid	64.6	62.28
Solyc03g097950.2.1	Tomato	nucleus, plastid	64.6	61.9
Bra024367.1-P	Field mustard	plastid	63.35	60.35
AT5G65220.1	Thale cress	plastid	64.6	60.12
CDY37812	Canola	plastid	60.87	57.99
Zm00001d052216_P001	Maize	plastid	55.9	55.9
Os02t0754300-01	Rice	plastid	56.52	55.15
EES07227	Sorghum	plastid	53.42	53.42
GSMUA_Achr7P12650_001	Banana	plastid	56.52	53.22
Zm00001d018096_P001	Maize	plastid	51.55	51.55
TraesCS6A01G319100.1	Wheat	plastid	51.55	50.92
TraesCS6B01G349300.1	Wheat	plastid	51.55	50.92
TraesCS6D01G298300.1	Wheat	plastid	51.55	50.61
HORVU6Hr1G078290.1	Barley	plastid	50.31	50.0
CDY33973	Canola	endoplasmic reticulum	47.2	46.91
GSMUA_Achr10P...	Banana	nucleus	65.84	46.49

Protein Annotations

Gene3D:1.10.287.310	EntrezGene:100305741	MapMan:17.7.2.1.25	EMBL:ACUP02003316	EMBL:BT089513	UniProt:C6SWH0
ncoils:Coil	EnsemblPlantsGene:GLYMA_05G178000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlants:KRH59328	ProteinID:KRH59328
ProteinID:KRH59328.1	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR10916	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0001B14F05	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr5:-:36623493..36626441

Molecular Weight (calculated)

18272.5 Da

IEP (calculated)

10.863

GRAVY (calculated)

-0.567

Length

161 amino acids

Sequence
(BLAST)

001: MLSLSVASPS SSTISFLPKP FNGIQLRRSA TCSIPPTKCS ASVPVVMMSK RTEELKEIRQ MTTEQINEEV VDLKGELVML RLQKSARNEF KSSEFGRMRK
101: RIARMLTVKR EREIEEGINK RLSRKLDKKW KKSIVVRPPP SLKKLREEEA AAEAAEAEKA A

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.