Factsheet for Zm00001d052216_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017489_P001	Maize	cytosol	63.35	98.08
Zm00001d008544_P001	Maize	cytosol	62.11	96.15
EES07227	Sorghum	plastid	89.44	89.44
Zm00001d018096_P001	Maize	plastid	82.61	82.61
Os02t0754300-01	Rice	plastid	80.12	78.18
TraesCS6A01G319100.1	Wheat	plastid	77.64	76.69
HORVU6Hr1G078290.1	Barley	plastid	77.02	76.54
TraesCS6D01G298300.1	Wheat	plastid	77.64	76.22
TraesCS6B01G349300.1	Wheat	plastid	77.02	76.07
CDY14553	Canola	cytosol	45.96	64.35
Bra031870.1-P	Field mustard	mitochondrion	31.06	60.24
KRH59328	Soybean	endoplasmic reticulum, plastid	55.9	55.9
VIT_12s0121g00010.t01	Wine grape	plastid	54.66	54.66
KRH43174	Soybean	nucleus, plastid	54.66	54.66
VIT_07s0141g00200.t01	Wine grape	plastid	54.66	54.66
Solyc06g072470.2.1	Tomato	plastid	54.04	53.05
PGSC0003DMT400069271	Potato	plastid	55.28	52.98
Solyc03g097950.2.1	Tomato	nucleus, plastid	53.42	51.19
CDY08809	Canola	plastid	53.42	50.89
PGSC0003DMT400083984	Potato	plastid	52.17	50.3
Bra024367.1-P	Field mustard	plastid	52.8	50.3
AT5G65220.1	Thale cress	plastid	52.8	49.13
CDY37812	Canola	plastid	50.93	48.52
GSMUA_Achr7P12650_001	Banana	plastid	50.31	47.37
GSMUA_Achr10P...	Banana	nucleus	56.52	39.91
CDY33973	Canola	endoplasmic reticulum	36.65	36.42

Protein Annotations

Gene3D:1.10.287.310	MapMan:17.7.2.1.25	EntrezGene:541790	EMBL:AF147725	ProteinID:AQK56483.1	UniProt:B4G243
EMBL:BT043431	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR10916	UniProt:Q9SWI6	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI00000A6316	EnsemblPlantsGene:Zm00001d052216	EnsemblPlants:Zm00001d052216_P001	EnsemblPlants:Zm00001d052216_T001
SEG:seg	:	:	:	:	:

Description

ribosomal protein L29 ribosomal protein L29

Coordinates

chr4:-:183515085..183516581

Molecular Weight (calculated)

18094.3 Da

IEP (calculated)

11.490

GRAVY (calculated)

-0.432

Length

161 amino acids

Sequence
(BLAST)

001: MATMSLAAAS PLASIPRGIA AQAPCAAFLS IRLGGATATR FAGLAVASQP AERRAAAMVA MAKREQELEE IRAMTTEQME EEVVDLKGEL FLLRLKRSAR
101: QEFKNSEFSR MRKRIARMLT VKREREIEQG INKRLSRKLD RKWKQSIVVR PPPSLRGNKE E

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.