CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017489_P001	Maize	cytosol	60.25	93.27
Zm00001d008544_P001	Maize	cytosol	59.01	91.35
Zm00001d052216_P001	Maize	plastid	89.44	89.44
Zm00001d018096_P001	Maize	plastid	86.34	86.34
Os02t0754300-01	Rice	plastid	81.37	79.39
TraesCS6A01G319100.1	Wheat	plastid	79.5	78.53
HORVU6Hr1G078290.1	Barley	plastid	78.26	77.78
TraesCS6D01G298300.1	Wheat	plastid	78.88	77.44
TraesCS6B01G349300.1	Wheat	plastid	78.26	77.3
CDY14553	Canola	cytosol	45.96	64.35
Bra031870.1-P	Field mustard	mitochondrion	30.43	59.04
VIT_12s0121g00010.t01	Wine grape	plastid	54.66	54.66
VIT_07s0141g00200.t01	Wine grape	plastid	54.66	54.66
KRH59328	Soybean	endoplasmic reticulum, plastid	53.42	53.42
Solyc06g072470.2.1	Tomato	plastid	53.42	52.44
PGSC0003DMT400069271	Potato	plastid	54.66	52.38
KRH43174	Soybean	nucleus, plastid	52.17	52.17
Solyc03g097950.2.1	Tomato	nucleus, plastid	53.42	51.19
PGSC0003DMT400083984	Potato	plastid	52.17	50.3
CDY08809	Canola	plastid	52.8	50.3
Bra024367.1-P	Field mustard	plastid	52.8	50.3
AT5G65220.1	Thale cress	plastid	52.8	49.13
CDY37812	Canola	plastid	50.93	48.52
GSMUA_Achr7P12650_001	Banana	plastid	49.69	46.78
GSMUA_Achr10P...	Banana	nucleus	55.28	39.04
CDY33973	Canola	endoplasmic reticulum	35.4	35.19

Protein Annotations

Gene3D:1.10.287.310	MapMan:17.7.2.1.25	EntrezGene:8075691	UniProt:C5XYD9	EnsemblPlants:EES07227	ProteinID:EES07227
ProteinID:EES07227.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009295	GO:GO:0009536	GO:GO:0009570	GO:GO:0009941	GO:GO:0009987
GO:GO:0019538	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR10916	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
EnsemblPlantsGene:SORBI_3004G231800	SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI0001A85944	RefSeq:XP_002454251.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:58105505..58107121

Molecular Weight (calculated)

18118.2 Da

IEP (calculated)

11.726

GRAVY (calculated)

-0.496

Length

161 amino acids

Sequence
(BLAST)

001: MATMSLAAAS PLSSTARGIA APPPRTAFLS LRFGGVTATR FAGLAAASQP VERRAAAAVA MAKREQELEE IRAMTTEQLE EEVVDLKGEL FLLRLKRSAR
101: QEFKNSEFGR MRKRIARMLT VKREREIEQG INKRLSRKLD RKWKQSIVVR PPPSLRENKE A

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.