Factsheet for Solyc03g097950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083984	Potato	plastid	95.24	95.81
Solyc06g072470.2.1	Tomato	plastid	81.55	83.54
CDY14553	Canola	cytosol	52.98	77.39
Bra031870.1-P	Field mustard	mitochondrion	38.1	77.11
Zm00001d017489_P001	Maize	cytosol	45.83	74.04
Zm00001d008544_P001	Maize	cytosol	44.64	72.12
VIT_12s0121g00010.t01	Wine grape	plastid	67.86	70.81
VIT_07s0141g00200.t01	Wine grape	plastid	67.86	70.81
AT5G65220.1	Thale cress	plastid	66.67	64.74
KRH43174	Soybean	nucleus, plastid	61.9	64.6
KRH59328	Soybean	endoplasmic reticulum, plastid	61.9	64.6
CDY08809	Canola	plastid	63.69	63.31
CDY37812	Canola	plastid	63.69	63.31
Bra024367.1-P	Field mustard	plastid	62.5	62.13
EES07227	Sorghum	plastid	51.19	53.42
Zm00001d052216_P001	Maize	plastid	51.19	53.42
Os02t0754300-01	Rice	plastid	51.79	52.73
Zm00001d018096_P001	Maize	plastid	50.0	52.17
TraesCS6B01G349300.1	Wheat	plastid	50.0	51.53
TraesCS6D01G298300.1	Wheat	plastid	50.0	51.22
TraesCS6A01G319100.1	Wheat	plastid	49.4	50.92
HORVU6Hr1G078290.1	Barley	plastid	48.21	50.0
GSMUA_Achr7P12650_001	Banana	plastid	48.81	47.95
GSMUA_Achr10P...	Banana	nucleus	61.31	45.18
CDY33973	Canola	endoplasmic reticulum	39.29	40.74

Protein Annotations

Gene3D:1.10.287.310	MapMan:17.7.2.1.25	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:K4BJL2
HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR10916	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561
EnsemblPlantsGene:Solyc03g097950.2	EnsemblPlants:Solyc03g097950.2.1	TIGRFAMs:TIGR00012	UniParc:UPI0002768594	SEG:seg	:

Description

No Description!

Coordinates

chr3:+:60333003..60335357

Molecular Weight (calculated)

19352.6 Da

IEP (calculated)

11.000

GRAVY (calculated)

-0.677

Length

168 amino acids

Sequence
(BLAST)

001: MMSLSIATPP SSVNFASKLN LSKSSFHGVR IAQVCPVHAR SAHSIATTRS SSLMVVNMAK RDDELKEIRT KTTEELQEEI VDLKGELFML RLQRSARNEF
101: KSSEFLRMRK RIARMLTVKR EREMEEGINK RISRKLDRKW KKSIVPRPPP SLKKLREEEA AEEAKESA

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.