CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59328	Soybean	endoplasmic reticulum, plastid	95.03	95.03
Bra031870.1-P	Field mustard	mitochondrion	42.86	83.13
CDY14553	Canola	cytosol	56.52	79.13
Zm00001d017489_P001	Maize	cytosol	47.83	74.04
Zm00001d008544_P001	Maize	cytosol	46.58	72.12
VIT_12s0121g00010.t01	Wine grape	plastid	68.32	68.32
VIT_07s0141g00200.t01	Wine grape	plastid	68.32	68.32
Solyc06g072470.2.1	Tomato	plastid	65.22	64.02
PGSC0003DMT400083984	Potato	plastid	64.6	62.28
Solyc03g097950.2.1	Tomato	nucleus, plastid	64.6	61.9
PGSC0003DMT400069271	Potato	plastid	64.6	61.9
CDY08809	Canola	plastid	63.98	60.95
AT5G65220.1	Thale cress	plastid	63.35	58.96
Bra024367.1-P	Field mustard	plastid	61.49	58.58
CDY37812	Canola	plastid	60.87	57.99
Zm00001d052216_P001	Maize	plastid	54.66	54.66
Os02t0754300-01	Rice	plastid	55.9	54.55
EES07227	Sorghum	plastid	52.17	52.17
GSMUA_Achr7P12650_001	Banana	plastid	55.28	52.05
Zm00001d018096_P001	Maize	plastid	50.31	50.31
TraesCS6A01G319100.1	Wheat	plastid	50.93	50.31
TraesCS6B01G349300.1	Wheat	plastid	50.93	50.31
TraesCS6D01G298300.1	Wheat	plastid	50.93	50.0
HORVU6Hr1G078290.1	Barley	plastid	49.69	49.38
GSMUA_Achr10P...	Banana	nucleus	65.22	46.05
CDY33973	Canola	endoplasmic reticulum	45.34	45.06

Protein Annotations

Gene3D:1.10.287.310	MapMan:17.7.2.1.25	EMBL:ACUP02004848	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G135000	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	UniProt:I1KT08	EnsemblPlants:KRH43174	ProteinID:KRH43174	ProteinID:KRH43174.1	HAMAP:MF_00374
PFAM:PF00831	PANTHER:PTHR10916	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561	TIGRFAMs:TIGR00012
UniParc:UPI00023C5B52	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:10345715..10348413

Molecular Weight (calculated)

18427.7 Da

IEP (calculated)

11.130

GRAVY (calculated)

-0.611

Length

161 amino acids

Sequence
(BLAST)

001: MLSLSVASPS SSTISFLPKP FNGIQLRRTA TCSIPPTKRS SFVPVVVMSK RTEELKEIRQ MTTERINEEV VDLKGELVML RLQKSARNEF KSSDFGRMRK
101: RIARMLTVKR EREIEEGINK RLSRKLDKKW KKSIVVRPPP SLKKLREEEA AAEAAETEKA A

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.