Factsheet for HORVU6Hr1G078290.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G298300.1	Wheat	plastid	97.53	96.34
TraesCS6A01G319100.1	Wheat	plastid	96.91	96.32
TraesCS6B01G349300.1	Wheat	plastid	96.3	95.71
Zm00001d017489_P001	Maize	cytosol	51.85	80.77
Zm00001d008544_P001	Maize	cytosol	50.62	78.85
Os02t0754300-01	Rice	plastid	80.25	78.79
EES07227	Sorghum	plastid	77.78	78.26
Zm00001d052216_P001	Maize	plastid	76.54	77.02
Zm00001d018096_P001	Maize	plastid	72.22	72.67
CDY14553	Canola	cytosol	44.44	62.61
Bra031870.1-P	Field mustard	mitochondrion	30.25	59.04
VIT_12s0121g00010.t01	Wine grape	plastid	51.85	52.17
VIT_07s0141g00200.t01	Wine grape	plastid	51.85	52.17
KRH59328	Soybean	endoplasmic reticulum, plastid	50.0	50.31
CDY08809	Canola	plastid	51.85	49.7
KRH43174	Soybean	nucleus, plastid	49.38	49.69
PGSC0003DMT400069271	Potato	plastid	51.23	49.4
Solyc06g072470.2.1	Tomato	plastid	50.0	49.39
CDY37812	Canola	plastid	51.23	49.11
Bra024367.1-P	Field mustard	plastid	50.62	48.52
Solyc03g097950.2.1	Tomato	nucleus, plastid	50.0	48.21
PGSC0003DMT400083984	Potato	plastid	48.77	47.31
AT5G65220.1	Thale cress	plastid	50.0	46.82
GSMUA_Achr7P12650_001	Banana	plastid	47.53	45.03
GSMUA_Achr10P...	Banana	nucleus	52.47	37.28
CDY33973	Canola	endoplasmic reticulum	36.42	36.42

Protein Annotations

Gene3D:1.10.287.310	MapMan:17.7.2.1.25	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU6Hr1G078290	EnsemblPlants:HORVU6Hr1G078290.1
UniProt:M0WJK0	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR10916	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	TIGRFAMs:TIGR00012	UniParc:UPI00029523E5	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr6H:+:533611927..533613513

Molecular Weight (calculated)

18066.0 Da

IEP (calculated)

11.710

GRAVY (calculated)

-0.546

Length

162 amino acids

Sequence
(BLAST)

001: MATMSLAAAS PLTASTPRGL AVSAPRAPFL APRAFGASAT RFAGLAAAPR PSGRGDAAVV RMAKREQELE EIRAMETENL EQEVVDLKGE LFLLRLKRSA
101: RQEFKSSEFG RMRKRVARLL TVRREREIEQ GINKRNSRKL DRKWKLGIVV GPPPSLREKK ED

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.