Factsheet for Solyc06g072470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 9

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069271	Potato	plastid	96.34	94.05
Solyc03g097950.2.1	Tomato	nucleus, plastid	83.54	81.55
CDY14553	Canola	cytosol	54.88	78.26
Bra031870.1-P	Field mustard	mitochondrion	39.02	77.11
Zm00001d017489_P001	Maize	cytosol	47.56	75.0
Zm00001d008544_P001	Maize	cytosol	46.34	73.08
VIT_12s0121g00010.t01	Wine grape	plastid	70.73	72.05
VIT_07s0141g00200.t01	Wine grape	plastid	70.73	72.05
KRH59328	Soybean	endoplasmic reticulum, plastid	65.24	66.46
CDY08809	Canola	plastid	67.68	65.68
KRH43174	Soybean	nucleus, plastid	64.02	65.22
AT5G65220.1	Thale cress	plastid	68.29	64.74
Bra024367.1-P	Field mustard	plastid	65.85	63.91
CDY37812	Canola	plastid	65.24	63.31
Zm00001d052216_P001	Maize	plastid	53.05	54.04
EES07227	Sorghum	plastid	52.44	53.42
Os02t0754300-01	Rice	plastid	53.66	53.33
Zm00001d018096_P001	Maize	plastid	50.61	51.55
TraesCS6A01G319100.1	Wheat	plastid	50.61	50.92
TraesCS6B01G349300.1	Wheat	plastid	50.61	50.92
TraesCS6D01G298300.1	Wheat	plastid	50.61	50.61
HORVU6Hr1G078290.1	Barley	plastid	49.39	50.0
GSMUA_Achr7P12650_001	Banana	plastid	48.78	46.78
GSMUA_Achr10P...	Banana	nucleus	61.59	44.3
CDY33973	Canola	endoplasmic reticulum	40.24	40.74

Protein Annotations

Gene3D:1.10.287.310	MapMan:17.7.2.1.25	ncoils:Coil	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	UniProt:K4C8W7
HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR10916	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf	SUPFAM:SSF46561
EnsemblPlantsGene:Solyc06g072470.2	EnsemblPlants:Solyc06g072470.2.1	TIGRFAMs:TIGR00012	UniParc:UPI000276579E	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:44697071..44698671

Molecular Weight (calculated)

18926.2 Da

IEP (calculated)

10.900

GRAVY (calculated)

-0.713

Length

164 amino acids

Sequence
(BLAST)

001: MMSLSIASPS GVTFTSKMNL SKSSFHGIQI PKIMQARAVN APPHSCSSLV VKMAKREEEL KEIRTKTTEE LQEEIVDLKG ELFMLRLQRS ARNEFKSSEF
101: LRMRKRIARM LTVKREREVE EGINKRISRK LDRKWKKSIV PRPPPSLKKL REEEAAEEAK ESAS

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.