Factsheet for VIT_12s0121g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0141g00200.t01	Wine grape	plastid	99.38	99.38
CDY14553	Canola	cytosol	58.39	81.74
Bra031870.1-P	Field mustard	mitochondrion	40.99	79.52
Zm00001d017489_P001	Maize	cytosol	47.83	74.04
Zm00001d008544_P001	Maize	cytosol	46.58	72.12
Solyc06g072470.2.1	Tomato	plastid	72.05	70.73
PGSC0003DMT400069271	Potato	plastid	72.67	69.64
KRH59328	Soybean	endoplasmic reticulum, plastid	69.57	69.57
KRH43174	Soybean	nucleus, plastid	68.32	68.32
PGSC0003DMT400083984	Potato	plastid	70.81	68.26
Solyc03g097950.2.1	Tomato	nucleus, plastid	70.81	67.86
CDY08809	Canola	plastid	70.19	66.86
CDY37812	Canola	plastid	68.94	65.68
Bra024367.1-P	Field mustard	plastid	67.7	64.5
AT5G65220.1	Thale cress	plastid	68.32	63.58
GSMUA_Achr7P12650_001	Banana	plastid	58.39	54.97
Zm00001d052216_P001	Maize	plastid	54.66	54.66
EES07227	Sorghum	plastid	54.66	54.66
Os02t0754300-01	Rice	plastid	54.66	53.33
TraesCS6A01G319100.1	Wheat	plastid	53.42	52.76
TraesCS6B01G349300.1	Wheat	plastid	53.42	52.76
TraesCS6D01G298300.1	Wheat	plastid	53.42	52.44
Zm00001d018096_P001	Maize	plastid	52.17	52.17
HORVU6Hr1G078290.1	Barley	plastid	52.17	51.85
GSMUA_Achr10P...	Banana	nucleus	68.94	48.68
CDY33973	Canola	endoplasmic reticulum	42.24	41.98

Protein Annotations

Gene3D:1.10.287.310	EntrezGene:100248255	wikigene:100248255	MapMan:17.7.2.1.25	ProteinID:CCB62624	ProteinID:CCB62624.1
ncoils:Coil	UniProt:F6I6Q6	EMBL:FN596758	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EntrezGene:LOC100248255
wikigene:LOC100248255	HAMAP:MF_00374	PFAM:PF00831	PANTHER:PTHR10916	InterPro:Ribosomal_L29/L35	InterPro:Ribosomal_L29/L35_sf
SUPFAM:SSF46561	TIGR:TC55950	TIGRFAMs:TIGR00012	UniParc:UPI0002108EB4	ArrayExpress:VIT_12s0121g00010	EnsemblPlantsGene:VIT_12s0121g00010
EnsemblPlants:VIT_12s0121g00010.t01	RefSeq:XP_003633349	RefSeq:XP_003633349.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:11474454..11477223

Molecular Weight (calculated)

18471.5 Da

IEP (calculated)

10.988

GRAVY (calculated)

-0.774

Length

161 amino acids

Sequence
(BLAST)

001: MFSLSIASPS SLKIPPKTTS TFPKSSFNGI RIPTPNKPSF RSPSSSSSVV MMAKREEELK EIRAKTTEEL NEEIVDLKGE LLMLRLQKSV RNEFKPSEFG
101: RMRKRVARML TVKREREIEE GINKRLSRKL DRQWKKSIVV RPPPSLKKLQ EEEAAAEAEK S

Best Arabidopsis Sequence Match ( AT5G65220.1 )
(BLAST)

001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA

Arabidopsis Description

RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.