Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017489_P001 | Maize | cytosol | 62.61 | 69.23 |
| Zm00001d008544_P001 | Maize | cytosol | 61.74 | 68.27 |
| CDY08809 | Canola | plastid | 99.13 | 67.46 |
| Bra024367.1-P | Field mustard | plastid | 98.26 | 66.86 |
| CDY37812 | Canola | plastid | 92.17 | 62.72 |
| AT5G65220.1 | Thale cress | plastid | 90.43 | 60.12 |
| VIT_12s0121g00010.t01 | Wine grape | plastid | 81.74 | 58.39 |
| VIT_07s0141g00200.t01 | Wine grape | plastid | 81.74 | 58.39 |
| KRH59328 | Soybean | endoplasmic reticulum, plastid | 81.74 | 58.39 |
| KRH43174 | Soybean | nucleus, plastid | 79.13 | 56.52 |
| Solyc06g072470.2.1 | Tomato | plastid | 78.26 | 54.88 |
| PGSC0003DMT400069271 | Potato | plastid | 78.26 | 53.57 |
| PGSC0003DMT400083984 | Potato | plastid | 77.39 | 53.29 |
| Solyc03g097950.2.1 | Tomato | nucleus, plastid | 77.39 | 52.98 |
| CDY33973 | Canola | endoplasmic reticulum | 70.43 | 50.0 |
| EES07227 | Sorghum | plastid | 64.35 | 45.96 |
| Zm00001d052216_P001 | Maize | plastid | 64.35 | 45.96 |
| Os02t0754300-01 | Rice | plastid | 65.22 | 45.45 |
| TraesCS6D01G298300.1 | Wheat | plastid | 64.35 | 45.12 |
| GSMUA_Achr7P12650_001 | Banana | plastid | 66.96 | 45.03 |
| TraesCS6A01G319100.1 | Wheat | plastid | 63.48 | 44.79 |
| TraesCS6B01G349300.1 | Wheat | plastid | 63.48 | 44.79 |
| Zm00001d018096_P001 | Maize | plastid | 62.61 | 44.72 |
| HORVU6Hr1G078290.1 | Barley | plastid | 62.61 | 44.44 |
| GSMUA_Achr10P... | Banana | nucleus | 77.39 | 39.04 |
Protein Annotations
| Gene3D:1.10.287.310 | MapMan:17.7.2.1.25 | GO:A0A078FQG6 | UniProt:A0A078FQG6 | EnsemblPlants:CDY14553 | ProteinID:CDY14553 |
| ProteinID:CDY14553.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00079288001 | HAMAP:MF_00374 |
| PFAM:PF00831 | PANTHER:PTHR10916 | InterPro:Ribosomal_L29/L35 | InterPro:Ribosomal_L29/L35_sf | SUPFAM:SSF46561 | TIGRFAMs:TIGR00012 |
| UniParc:UPI0004EDBB49 | SEG:seg | : | : | : | : |
Description
BnaC03g49060DBnaC03g49060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQG6]
Coordinates
chrLK032044:+:524033..525208
Molecular Weight (calculated)
13525.5 Da
IEP (calculated)
10.604
GRAVY (calculated)
-0.930
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSKREVELK EIRAKTTEEL NEEVIDLKGE LFMLRLQKSA RNEFKSSEFR RMKKQVARIL TVRREREIEE GIGKRLSRKL DRQWKKSIVV RPPPSLKKLQ
101: EEEAAEEAAE AAKSA
101: EEEAAEEAAE AAKSA
001: MLSLSIATPG TAAIFRRGTA SATSTSSSFH GVRIQHQVSA RVPAAATISS SSPKPSVVMM SKREAELKEI RSKTTEQLQE EVVDLKGELF MLRLQKSARN
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA
101: EFKSSDFRRM KKQVARMLTV KREREIKEGI KKRLSRKLDR QWKKSIVPRP PPSLKKLQEE EAAEEAAEAA KSA
Arabidopsis Description
RPL29AT5G65220 protein [Source:UniProtKB/TrEMBL;Acc:B9DH43]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.