CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH03220
KRH56614
KRH57136

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	KRG93305	AT3G27960.1	21798944
AT1G55890.1	KRH56614	AT3G27960.1	21798944
AT1G55890.1	KRH03220	AT4G24690.1	21798944
AT1G55890.1	KRH57136	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49916	Soybean	cytosol	93.18	88.75
VIT_00s0271g00080.t01	Wine grape	mitochondrion	50.66	53.17
VIT_00s0274g00040.t01	Wine grape	mitochondrion	52.76	52.62
PGSC0003DMT400012953	Potato	cytosol	51.44	51.72
Solyc03g031460.1.1	Tomato	plastid	50.92	51.19
AT1G55890.1	Thale cress	mitochondrion	48.82	46.73
CDY26081	Canola	mitochondrion	48.56	46.72
Bra037096.1-P	Field mustard	mitochondrion	48.56	46.6
CDY08267	Canola	mitochondrion	48.56	46.6
AT3G13160.1	Thale cress	mitochondrion	47.51	45.94
Bra039373.1-P	Field mustard	cytosol	32.81	45.62
CDY66550	Canola	mitochondrion	35.43	45.15
CDY43367	Canola	mitochondrion	45.67	44.16
Bra001492.1-P	Field mustard	mitochondrion	45.67	43.5
CDY24208	Canola	mitochondrion	44.62	43.15
CDX82550	Canola	mitochondrion	44.36	43.0
GSMUA_Achr10P...	Banana	mitochondrion	37.8	35.91
HORVU3Hr1G077400.1	Barley	cytosol	32.02	31.85
Zm00001d012606_P001	Maize	mitochondrion	37.01	31.13
EES01580	Sorghum	mitochondrion	35.17	30.52
TraesCS3B01G361800.1	Wheat	plastid	34.65	30.07
Os01t0785700-01	Rice	mitochondrion	33.6	29.49
TraesCS3B01G353300.1	Wheat	plastid	32.28	29.43
EES01579	Sorghum	mitochondrion	33.07	29.37
TraesCS3A01G324200.1	Wheat	plastid	34.65	29.01
TraesCS3A01G324300.1	Wheat	plastid	32.81	28.94
TraesCS3D01G325200.1	Wheat	plastid	33.86	28.73
KRH11411	Soybean	nucleus	29.13	28.61
KRH20872	Soybean	mitochondrion	13.12	28.41
TraesCS3A01G331600.1	Wheat	plastid	34.12	28.32
TraesCS3D01G317700.1	Wheat	plastid	34.65	27.97
TraesCS3A01G331700.1	Wheat	plastid	30.45	27.17
TraesCS3A01G324500.1	Wheat	plastid	32.81	26.43
EER95222	Sorghum	mitochondrion	34.12	26.37
HORVU6Hr1G019320.1	Barley	plastid	32.02	26.29
HORVU3Hr1G077440.2	Barley	mitochondrion	32.55	25.25
TraesCS3B01G353500.1	Wheat	plastid	32.28	24.45
TraesCS3D01G317800.1	Wheat	plastid	31.76	24.06
KRH20873	Soybean	cytosol, mitochondrion	7.87	23.62

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100804069	MapMan:35.1	EMBL:ACUP02004784	EnsemblPlantsGene:GLYMA_08G061500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1KQS1	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH41973	ProteinID:KRH41973	ProteinID:KRH41973.1
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023383D1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:4744310..4746086

Molecular Weight (calculated)

43451.5 Da

IEP (calculated)

8.716

GRAVY (calculated)

-0.338

Length

381 amino acids

Sequence
(BLAST)

001: MYRVLHRAFC TATEPATTAT VTVSIKSISE DLYKEVKLKN VVEKFKKASD IDRFRKKTGI YEDTVRRLAG ARRFRWIRDI LEHQKQYSDI SNEGFSARLI
101: SLYGKSGMTK HARKVFDEMP QRNCSRTVLS LNALLAAYLH SRKYDIVGEL FRDLPTQLSI KPDLVTYNTI IKAFCEKGSF DSALSVFQEI EEKGLSPDSI
201: TFNTLLDGLY SKGRFEEGEK VWEQMGVKNV APGVRSYCSK LVGLAEVKKM GEAVVLFREM EKLGVKPDLF CINAVIKGFV NEGNLDEAKK WFGEIAKFEY
301: DPDRNTYSII VPFLCEKGDF KTAIDMCKEI FNNRCRVDAT LLQGVVDKLA SEGMDTEAKE IVEIGKTNRY CRYRLDLPAE K

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.