Factsheet for TraesCS3A01G331600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G361800.1	Wheat	plastid	89.11	93.17
TraesCS3D01G325200.1	Wheat	plastid	85.62	87.53
TraesCS3A01G331700.1	Wheat	plastid	70.15	75.41
HORVU6Hr1G019320.1	Barley	plastid	75.38	74.57
TraesCS3A01G324300.1	Wheat	plastid	69.93	74.31
TraesCS3A01G324200.1	Wheat	plastid	70.37	70.99
TraesCS3A01G324500.1	Wheat	plastid	69.93	67.86
Os01t0785700-01	Rice	mitochondrion	53.59	56.68
EES01580	Sorghum	mitochondrion	50.33	52.62
Zm00001d012606_P001	Maize	mitochondrion	51.85	52.54
EES01579	Sorghum	mitochondrion	48.8	52.21
EER95222	Sorghum	mitochondrion	51.42	47.87
GSMUA_Achr10P...	Banana	mitochondrion	39.43	45.14
VIT_00s0274g00040.t01	Wine grape	mitochondrion	30.5	36.65
VIT_00s0271g00080.t01	Wine grape	mitochondrion	28.32	35.81
VIT_00s0271g00040.t01	Wine grape	cytosol	15.9	35.78
Solyc03g031460.1.1	Tomato	plastid	28.32	34.3
KRH41973	Soybean	nucleus	28.32	34.12
VIT_00s0271g00070.t01	Wine grape	mitochondrion	28.1	34.04
PGSC0003DMT400012953	Potato	cytosol	28.1	34.04
VIT_00s0271g00050.t01	Wine grape	mitochondrion	16.56	33.48
Bra039373.1-P	Field mustard	cytosol	19.83	33.21
KRH49916	Soybean	cytosol	28.54	32.75
Bra037096.1-P	Field mustard	mitochondrion	27.89	32.24
CDY08267	Canola	mitochondrion	27.89	32.24
PGSC0003DMT400055888	Potato	mitochondrion	26.36	32.1
CDY26081	Canola	mitochondrion	27.45	31.82
CDY24208	Canola	mitochondrion	27.02	31.47
CDY43367	Canola	mitochondrion	26.58	30.96
AT1G55890.1	Thale cress	mitochondrion	26.8	30.9
AT3G13160.1	Thale cress	mitochondrion	26.36	30.71
PGSC0003DMT400055889	Potato	plastid	26.14	30.53
Solyc02g079830.1.1	Tomato	mitochondrion	26.36	30.25
CDX82550	Canola	mitochondrion	25.71	30.03
PGSC0003DMT400071165	Potato	extracellular	11.33	29.55
Bra001492.1-P	Field mustard	mitochondrion	25.71	29.5
CDY66550	Canola	mitochondrion	19.17	29.43
Solyc02g079820.2.1	Tomato	cytosol, plastid	19.61	28.75
TraesCS3A01G326500.1	Wheat	mitochondrion	23.31	27.44
TraesCS1A01G160400.1	Wheat	cytosol	12.85	26.94
CDY43368	Canola	plastid	25.05	26.2
CDY24210	Canola	plastid	24.84	26.03
Bra039372.1-P	Field mustard	cytosol, plastid	25.05	24.06
TraesCS6A01G221200.1	Wheat	mitochondrion	22.0	21.86
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	20.7	21.21
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	17.86	21.19
AT3G13150.1	Thale cress	plastid	24.84	20.69

Protein Annotations

EnsemblPlants:TraesCS3A01G331600.1	EnsemblPlantsGene:TraesCS3A01G331600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr3A:-:576268640..576270019

Molecular Weight (calculated)

50106.1 Da

IEP (calculated)

9.754

GRAVY (calculated)

-0.316

Length

459 amino acids

Sequence
(BLAST)

001: MSSLAAAAAA AVAAASTWVK SLSRIVSPST PAVKPPKRNP KTKRAPPAAD ADSIANQKLP KPLGAHPAGE AESGAGHELG KPLSGVVKAL IRERDPDKLV
101: SKFVEASSAS SRFRDGQRAY DVAVSRLTSL GRKDGIEAII DAQKPFLETS SEGFAARLIR LYGSASMASH AVATFHQLPA RHKSTRTFNA VLAAYAEAGD
201: VGALTAAFQE IPATHPSIVP DLYSYNALIR TLCQKSNLSA ALYAVHLMKK HGVSPDIITF NSLLDGFHNS GRNDEAEAVW EMIKERNLEP DAKCYNAKLR
301: GLVAQGRIDD AAAVLERLEK DGPKPNIVSY NQLILGYCKA GRFQEAKKVY DNLMKNECVP NKGTYETLVP HLVQAGELDC ALRYCYEIFA SKKCCGVECG
401: VLQDVVNALV NASRVKEAIK LVELGRKSNY HRKYYHLKLM RKNQYQKKRS VKVEDWTEK

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.