Factsheet for Solyc02g079820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055888	Potato	mitochondrion	84.03	69.76
Solyc02g079830.1.1	Tomato	mitochondrion	52.72	41.25
VIT_00s0271g00050.t01	Wine grape	mitochondrion	24.28	33.48
VIT_00s0271g00070.t01	Wine grape	mitochondrion	39.62	32.72
VIT_00s0271g00040.t01	Wine grape	cytosol	21.09	32.35
Solyc03g031460.1.1	Tomato	plastid	35.78	29.55
GSMUA_Achr10P...	Banana	mitochondrion	33.55	26.18
CDY43368	Canola	plastid	35.78	25.51
CDY24210	Canola	plastid	35.14	25.11
Bra039372.1-P	Field mustard	cytosol, plastid	35.14	23.01
HORVU3Hr1G077400.1	Barley	cytosol	26.84	21.93
TraesCS3B01G361800.1	Wheat	plastid	29.71	21.18
AT3G13150.1	Thale cress	plastid	36.74	20.87
Solyc02g085550.1.1	Tomato	plastid	16.29	20.82
Os01t0785700-01	Rice	mitochondrion	28.75	20.74
TraesCS3A01G331700.1	Wheat	plastid	28.11	20.61
Zm00001d012606_P001	Maize	mitochondrion	29.71	20.53
TraesCS3D01G325200.1	Wheat	plastid	29.07	20.27
TraesCS3D01G317700.1	Wheat	plastid	30.03	19.92
TraesCS3A01G324300.1	Wheat	plastid	27.48	19.91
TraesCS3A01G331600.1	Wheat	plastid	28.75	19.61
EES01579	Sorghum	mitochondrion	26.84	19.58
TraesCS3A01G324200.1	Wheat	plastid	28.43	19.56
Solyc02g062910.1.1	Tomato	plastid	25.88	19.47
TraesCS3B01G353300.1	Wheat	plastid	25.88	19.38
EES01580	Sorghum	mitochondrion	26.84	19.13
HORVU6Hr1G019320.1	Barley	plastid	27.8	18.75
Solyc10g005280.1.1	Tomato	mitochondrion	23.96	18.66
TraesCS3A01G324500.1	Wheat	plastid	27.48	18.18
HORVU3Hr1G077440.2	Barley	mitochondrion	27.8	17.72
EER95222	Sorghum	mitochondrion	26.52	16.84
TraesCS3B01G353500.1	Wheat	plastid	26.52	16.5
TraesCS3D01G317800.1	Wheat	plastid	26.52	16.5
Solyc05g012250.1.1	Tomato	mitochondrion	24.92	15.15
Solyc02g085650.2.1	Tomato	plastid	24.92	12.07

Protein Annotations

EnsemblPlants:Solyc02g079820.2.1	EnsemblPlantsGene:Solyc02g079820.2	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	UniParc:UPI0002768C15
UniProt:K4B9K3	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2:+:44242719..44244173

Molecular Weight (calculated)

35537.2 Da

IEP (calculated)

9.267

GRAVY (calculated)

-0.288

Length

313 amino acids

Sequence
(BLAST)

001: MSTSSSLRRV KGIFAGNERA INQIITCSRP TDRAQAMVDS FKKSSECPKF RLNRASIMKS PFTNLPKPNT NPMDHRARKL FDEMPHLNCP RTVFSFNALL
101: EAYLKSEKYD EIGGLFRELP PKLSIQPDLV SYATAIKALC RAGLLDSAVY LMDEIENHGI KPNIVTCNTS LTAFYERKRF SEAENLWAMM EKRNIIPDLC
201: SHNIKLISLV KANEVSKGNL EEVNIWYEKM TQNGCLPDVS TFTILVNFAC SAKKVDFALD LCKEAMKSRK AIHNTIMQRV VNCLVEHSKI ETARELVKLA
301: QSYKSFRNEL SLP

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.