Factsheet for Solyc02g079830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055889	Potato	plastid	90.75	92.37
Solyc02g079820.2.1	Tomato	cytosol, plastid	41.25	52.72
VIT_00s0271g00050.t01	Wine grape	mitochondrion	28.75	50.66
VIT_00s0271g00070.t01	Wine grape	mitochondrion	43.25	45.65
VIT_00s0271g00040.t01	Wine grape	cytosol	22.0	43.14
Solyc03g031460.1.1	Tomato	plastid	38.0	40.11
CDY43368	Canola	plastid	39.0	35.54
CDY24210	Canola	plastid	38.75	35.39
GSMUA_Achr10P...	Banana	mitochondrion	34.5	34.41
Bra039372.1-P	Field mustard	cytosol, plastid	38.0	31.8
HORVU3Hr1G077400.1	Barley	cytosol	30.25	31.59
TraesCS3B01G353300.1	Wheat	plastid	31.0	29.67
Os01t0785700-01	Rice	mitochondrion	31.25	28.8
AT3G13150.1	Thale cress	plastid	39.5	28.68
TraesCS3A01G324200.1	Wheat	plastid	32.0	28.13
TraesCS3A01G331700.1	Wheat	plastid	30.0	28.1
HORVU6Hr1G019320.1	Barley	plastid	32.5	28.02
TraesCS3B01G361800.1	Wheat	plastid	30.5	27.79
TraesCS3D01G317700.1	Wheat	plastid	32.75	27.75
Zm00001d012606_P001	Maize	mitochondrion	31.25	27.59
TraesCS3D01G325200.1	Wheat	plastid	30.75	27.39
TraesCS3A01G324300.1	Wheat	plastid	29.5	27.31
TraesCS3A01G324500.1	Wheat	plastid	31.75	26.85
EES01580	Sorghum	mitochondrion	29.25	26.65
TraesCS3A01G331600.1	Wheat	plastid	30.25	26.36
EES01579	Sorghum	mitochondrion	28.25	26.34
Solyc02g085550.1.1	Tomato	plastid	15.75	25.71
HORVU3Hr1G077440.2	Barley	mitochondrion	31.5	25.66
Solyc02g062910.1.1	Tomato	plastid	26.25	25.24
TraesCS3B01G353500.1	Wheat	plastid	31.0	24.65
TraesCS3D01G317800.1	Wheat	plastid	30.75	24.45
EER95222	Sorghum	mitochondrion	29.0	23.53
Solyc10g005280.1.1	Tomato	mitochondrion	23.5	23.38
Solyc05g012250.1.1	Tomato	mitochondrion	26.25	20.39
Solyc02g085650.2.1	Tomato	plastid	27.0	16.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
UniProt:K4B9K4	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	EnsemblPlantsGene:Solyc02g079830.1	EnsemblPlants:Solyc02g079830.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002768C16	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:44245079..44246281

Molecular Weight (calculated)

46209.5 Da

IEP (calculated)

7.776

GRAVY (calculated)

-0.374

Length

400 amino acids

Sequence
(BLAST)

001: MASSSVYRRL HGLFTGKRKV SVNLKTEQPQ TTSTKPTSKL SEKHKLQSII DNFKKSSESP EFRNRCANYT AAIRRLEFNS SAIEDIFEHQ KQYPEISNEF
101: FVCRLILLYG TVKMHEHARK LFDEMPNLKC QRTVFSFNAL LEAYSRAEKY DIISDLFREL PEELSIEPDV VSYNTLIKAL WKAGSLDSAP SVMDEMEKHG
201: IIPDLVTFNT LSNAYYKSKR FSEAEDLWVL MQKKNVDADL GSYTIRLQGL VANNQVNEAI ELFEEMGKKD IIPKAFSYNI MIKMYVDDRN WEEAERWYVK
301: MVENGCYPDY ATFEKLISFA CDKDNLDFAL ELCKKAIASK VAIHNATMQR VVNVLAEHSK LEDAQELVNL AKSCKLYHCR PRSRYKLSLP SSLIVAHFML

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.