Factsheet for TraesCS3A01G324500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G317800.1	Wheat	plastid	93.87	88.27
TraesCS3B01G353500.1	Wheat	plastid	92.81	87.28
HORVU3Hr1G077440.2	Barley	mitochondrion	88.37	85.13
TraesCS3A01G324300.1	Wheat	plastid	73.57	80.56
TraesCS3A01G324200.1	Wheat	plastid	77.38	80.44
TraesCS3A01G331700.1	Wheat	plastid	63.64	70.49
TraesCS3A01G331600.1	Wheat	plastid	67.86	69.93
Os01t0785700-01	Rice	mitochondrion	56.66	61.75
EES01580	Sorghum	mitochondrion	52.22	56.26
EES01579	Sorghum	mitochondrion	50.74	55.94
Zm00001d012606_P001	Maize	mitochondrion	53.49	55.85
EER95222	Sorghum	mitochondrion	53.28	51.12
GSMUA_Achr10P...	Banana	mitochondrion	40.8	48.13
VIT_00s0271g00040.t01	Wine grape	cytosol	16.49	38.24
VIT_00s0271g00050.t01	Wine grape	mitochondrion	17.76	37.0
VIT_00s0274g00040.t01	Wine grape	mitochondrion	29.6	36.65
VIT_00s0271g00070.t01	Wine grape	mitochondrion	29.18	36.41
VIT_00s0271g00080.t01	Wine grape	mitochondrion	27.7	36.09
PGSC0003DMT400012953	Potato	cytosol	27.7	34.56
Bra039373.1-P	Field mustard	cytosol	19.87	34.31
Solyc03g031460.1.1	Tomato	plastid	27.27	34.04
PGSC0003DMT400071165	Potato	extracellular	12.26	32.95
KRH41973	Soybean	nucleus	26.43	32.81
AT1G55890.1	Thale cress	mitochondrion	27.48	32.66
CDY26081	Canola	mitochondrion	27.06	32.32
CDY08267	Canola	mitochondrion	27.06	32.24
Bra037096.1-P	Field mustard	mitochondrion	27.06	32.24
AT3G13160.1	Thale cress	mitochondrion	26.85	32.23
CDY24208	Canola	mitochondrion	26.85	32.23
CDX82550	Canola	mitochondrion	26.64	32.06
CDY43367	Canola	mitochondrion	26.64	31.98
Solyc02g079830.1.1	Tomato	mitochondrion	26.85	31.75
Bra001492.1-P	Field mustard	mitochondrion	26.43	31.25
KRH49916	Soybean	cytosol	26.43	31.25
CDY66550	Canola	mitochondrion	19.66	31.1
PGSC0003DMT400055889	Potato	plastid	25.79	31.04
PGSC0003DMT400055888	Potato	mitochondrion	24.74	31.03
Solyc02g079820.2.1	Tomato	cytosol, plastid	18.18	27.48
TraesCS3A01G326500.1	Wheat	mitochondrion	21.99	26.67
TraesCS1A01G160400.1	Wheat	cytosol	11.84	25.57
CDY24210	Canola	plastid	22.83	24.66
CDY43368	Canola	plastid	22.83	24.6
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	20.08	24.55
TraesCS6A01G221200.1	Wheat	mitochondrion	23.68	24.24
Bra039372.1-P	Field mustard	cytosol, plastid	22.62	22.38
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	20.93	22.1
AT3G13150.1	Thale cress	plastid	23.26	19.96

Protein Annotations

EnsemblPlants:TraesCS3A01G324500.1	EnsemblPlantsGene:TraesCS3A01G324500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:569230126..569231547

Molecular Weight (calculated)

51616.6 Da

IEP (calculated)

7.921

GRAVY (calculated)

-0.364

Length

473 amino acids

Sequence
(BLAST)

001: MATAAAAAAA ATATASTRAN SLSRIFSSSS PIVKPPKHNP KTKSAPKPKP PAADAGSIAE KKSPKPLGGP HAAKAESDGK HKLPKPLGLL VKALSRQRDP
101: DKLISGFIQA STVSSRFRDR YRVFEVAVSR LASLGRQDGI EAIIEAQLPF LETSAEGFAT RLIRLYGRAS MPSHAAATFH KLPAQHKSNM TFNSLLSCYA
201: DAGDFDGLTA AFQEIPATYP SIAPTVYSYN VLIHALCQKP DISAALETVL LMEKHGVSPD IITFNTLLNG FCNNGRFDEA ETVWEMIKER NLEPDAKCYN
301: AKLRGLVAEG RIDDAAAVLE GLEKDGPKPN TVSYNELIRG YCKAGKLQEA KKLYDDLVKN ECAPNKGTYE TLLPHLLQAG ELDCALTYCY KIFSHKRNLR
401: VECGVLQDVV NALVDESRVE EAAKIVVLGR KKYYPRKGLR MPDGTKVSQL RAETDDEEAI SEEECEVEHE TEK

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.