Factsheet for VIT_00s0274g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g01280.t01
VIT_17s0000g09280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944
AT1G55890.1	VIT_17s0000g09280.t01	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0271g00080.t01	Wine grape	mitochondrion	92.41	97.25
VIT_00s0271g00050.t01	Wine grape	mitochondrion	33.51	56.39
PGSC0003DMT400012953	Potato	cytosol	55.5	55.94
Solyc03g031460.1.1	Tomato	plastid	54.19	54.62
VIT_00s0271g00070.t01	Wine grape	mitochondrion	53.66	54.09
KRH41973	Soybean	nucleus	52.62	52.76
VIT_00s0271g00040.t01	Wine grape	cytosol	28.01	52.45
CDY66550	Canola	mitochondrion	40.31	51.51
Bra039373.1-P	Field mustard	cytosol	36.39	50.73
CDX82550	Canola	mitochondrion	51.31	49.87
KRH49916	Soybean	cytosol	52.09	49.75
AT3G13160.1	Thale cress	mitochondrion	51.05	49.49
AT1G55890.1	Thale cress	mitochondrion	51.31	49.25
CDY43367	Canola	mitochondrion	50.79	49.24
Bra001492.1-P	Field mustard	mitochondrion	51.05	48.75
CDY26081	Canola	mitochondrion	50.26	48.48
CDY24208	Canola	mitochondrion	49.74	48.22
Bra037096.1-P	Field mustard	mitochondrion	49.74	47.86
CDY08267	Canola	mitochondrion	49.74	47.86
GSMUA_Achr10P...	Banana	mitochondrion	40.84	38.9
HORVU3Hr1G077400.1	Barley	cytosol	35.86	35.77
Zm00001d012606_P001	Maize	mitochondrion	41.36	34.88
Os01t0785700-01	Rice	mitochondrion	38.48	33.87
TraesCS3A01G324300.1	Wheat	plastid	37.96	33.56
EES01580	Sorghum	mitochondrion	38.22	33.26
EES01579	Sorghum	mitochondrion	36.91	32.87
TraesCS3B01G361800.1	Wheat	plastid	36.91	32.12
TraesCS3A01G324200.1	Wheat	plastid	37.7	31.65
TraesCS3B01G353300.1	Wheat	plastid	34.29	31.34
TraesCS3D01G325200.1	Wheat	plastid	36.65	31.18
TraesCS3A01G331700.1	Wheat	plastid	34.55	30.91
TraesCS3D01G317700.1	Wheat	plastid	37.96	30.72
VIT_04s0023g01460.t01	Wine grape	mitochondrion	33.25	30.68
TraesCS3A01G331600.1	Wheat	plastid	36.65	30.5
EER95222	Sorghum	mitochondrion	38.48	29.82
TraesCS3A01G324500.1	Wheat	plastid	36.65	29.6
VIT_09s0002g06540.t01	Wine grape	mitochondrion	32.46	29.38
HORVU6Hr1G019320.1	Barley	plastid	35.6	29.31
HORVU3Hr1G077440.2	Barley	mitochondrion	36.39	28.31
VIT_01s0010g01460.t01	Wine grape	mitochondrion	27.75	27.46
TraesCS3B01G353500.1	Wheat	plastid	36.13	27.44
TraesCS3D01G317800.1	Wheat	plastid	36.13	27.44
VIT_10s0116g00090.t01	Wine grape	mitochondrion	17.8	26.67
VIT_10s0116g00030.t01	Wine grape	plastid	27.49	26.52

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100255730	wikigene:100255730	EntrezGene:100853913	wikigene:100853913	MapMan:35.1
EMBL:AM458362	ProteinID:CAN76851	ProteinID:CAN76851.1	ProteinID:CCB45207	ProteinID:CCB45207.1	UniProt:F6GZ21
EMBL:FN594983	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100255730	wikigene:LOC100255730	EntrezGene:LOC100853913	wikigene:LOC100853913	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CD910
ArrayExpress:VIT_00s0274g00040	EnsemblPlantsGene:VIT_00s0274g00040	EnsemblPlants:VIT_00s0274g00040.t01	unigene:Vvi.17145	RefSeq:XP_002268636	RefSeq:XP_002268636.2
RefSeq:XP_003635182	RefSeq:XP_003635182.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:-:20393973..20395408

Molecular Weight (calculated)

43556.6 Da

IEP (calculated)

8.852

GRAVY (calculated)

-0.386

Length

382 amino acids

Sequence
(BLAST)

001: MSFLSRRLYR AFSTSTAATA QATGNLESVF KDIYRERNLK RLVQKFKKSS ELDRFRTKTG IYEETVRRLA SAKRFRWIEE ILEEQKKYKD ISREGFAVRL
101: ITLYGKSGMF DHAFKVFDEM PDQKCERSVL SFNALLGACV NSKKFDKVEG FFSELPSKLS VEPDLVSYNI VINGLCDMGS MDSAVGMLDE MEKKSLEPDL
201: ITFNTLLNGC YTSGRFLDGE KIWGRMEKKN ILPDIRSYNA KLVGLVSEKR MLEGIGLVEE MQTKGIKPDG YSFNALIKGF CNDGKVDEAT NWYGKMREND
301: CLPDKLTFAT LVPLYCEKGS FDQAFELCKE IFNRKCLVDE VLLQNAVDGL VKGGKVVEAK KLVQLGNSNS YRRYNLKIPT DK

Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)

001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.