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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 5
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001492.1-P Field mustard mitochondrion 97.46 95.75
CDY66550 Canola mitochondrion 72.01 94.65
CDY43367 Canola mitochondrion 87.79 87.56
CDY24208 Canola mitochondrion 86.51 86.29
AT3G13160.1 Thale cress mitochondrion 78.37 78.17
CDY26081 Canola mitochondrion 64.38 63.89
CDY08267 Canola mitochondrion 63.61 62.97
VIT_00s0271g00080.t01 Wine grape mitochondrion 47.84 51.79
VIT_00s0274g00040.t01 Wine grape mitochondrion 49.87 51.31
PGSC0003DMT400012953 Potato cytosol 46.82 48.55
Solyc03g031460.1.1 Tomato plastid 46.56 48.28
KRH41973 Soybean nucleus 43.0 44.36
KRH49916 Soybean cytosol 42.75 42.0
CDY43368 Canola plastid 37.4 33.49
CDY24210 Canola plastid 37.15 33.33
HORVU3Hr1G077400.1 Barley cytosol 31.3 32.11
GSMUA_Achr10P... Banana mitochondrion 32.32 31.67
TraesCS3A01G324300.1 Wheat plastid 31.55 28.7
Zm00001d012606_P001 Maize mitochondrion 32.57 28.26
EES01580 Sorghum mitochondrion 31.55 28.25
EES01579 Sorghum mitochondrion 30.79 28.21
Os01t0785700-01 Rice mitochondrion 30.53 27.65
TraesCS3B01G361800.1 Wheat plastid 30.53 27.33
TraesCS3B01G353300.1 Wheat plastid 29.01 27.27
CDY37572 Canola mitochondrion 27.48 27.14
CDY38649 Canola mitochondrion 26.72 27.06
TraesCS3A01G324200.1 Wheat plastid 31.04 26.81
TraesCS3A01G324500.1 Wheat plastid 32.06 26.64
CDY57688 Canola mitochondrion 26.46 26.6
TraesCS3D01G317700.1 Wheat plastid 31.81 26.48
TraesCS3A01G331700.1 Wheat plastid 28.75 26.46
CDY54310 Canola mitochondrion 26.21 26.34
CDY24774 Canola mitochondrion 27.23 26.29
CDY35471 Canola mitochondrion 27.23 26.29
TraesCS3D01G325200.1 Wheat plastid 29.77 26.06
CDX97972 Canola cytosol 18.32 25.81
TraesCS3A01G331600.1 Wheat plastid 30.03 25.71
CDY67618 Canola mitochondrion 27.23 25.54
CDY66741 Canola mitochondrion 26.97 25.3
HORVU3Hr1G077440.2 Barley mitochondrion 31.55 25.25
CDY25328 Canola mitochondrion, plastid 26.21 25.25
CDY47165 Canola mitochondrion 25.95 25.0
HORVU6Hr1G019320.1 Barley plastid 29.26 24.78
TraesCS3D01G317800.1 Wheat plastid 31.55 24.65
TraesCS3B01G353500.1 Wheat plastid 31.3 24.45
CDY07260 Canola cytosol 9.41 24.18
EER95222 Sorghum mitochondrion 30.28 24.14
CDY49792 Canola plastid 24.68 23.77
Protein Annotations
EnsemblPlants:CDX82550EnsemblPlantsGene:GSBRNA2T00137716001Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR002885InterPro:IPR011990InterPro:Pentatricopeptide_repeatInterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF1622
PFAM:PF01535PFAM:PF13041PFscan:PS51375ProteinID:CDX82550ProteinID:CDX82550.1SEG:seg
TIGRFAMs:TIGR00756UniParc:UPI0004EEB445MapMan:35.1:::
Description
BnaA03g32710D
Coordinates
chrLK031828:+:1877726..1879042
Molecular Weight (calculated)
44767.0 Da
IEP (calculated)
6.544
GRAVY (calculated)
-0.347
Length
393 amino acids
Sequence
(BLAST)
001: MSFLSRLLLR GTNSFNTTTT TTNIRFFSAV AATSQRTPSL ITLVNDETNP KHITEKFKKA CETEWFRKNK PVYERTVRRL AAAKKFEWIE EILEEQNKYP
101: NMSKEGFVAR IINLYGRAGM FENAQKVFDE MPQRSCKRTV LSFNALLNAC VNSKKFDLVE GMFNELPGKL SIEPDIASYN TLIKGLCGKG SLVEAVALID
201: VIENKGLKPD HFSYNLLLHE SYTKGHFDQG EEIWSRMVEK DVGRDIRSYN ARLLGLALEM KSEEMVGLFE ELKGNGIKPD VFTFTALVRG CAGEGKVDEA
301: KMWYKELEKN GFRPMKLIFS SLLPAMCKAG DLESAFELCK EIFSKRLLVD GDIMQDVVDE LVKGSKREEA EEIVELANKN EYLQFKLRLS SEE
Best Arabidopsis Sequence Match ( AT3G13160.1 )
(BLAST)
001: MSSLSRFLLR GNFSFSTHTN RRFFSAVTAA AATPSPPKPS LITLVNDERD PKFITEKFKK ACQAEWFRKN IAVYERTVRR LAAAKKFEWV EEILEEQNKY
101: PNMSKEGFVA RIINLYGRVG MFENAQKVFD EMPERNCKRT ALSFNALLNA CVNSKKFDLV EGIFKELPGK LSIEPDVASY NTLIKGLCGK GSFTEAVALI
201: DEIENKGLKP DHITFNILLH ESYTKGKFEE GEQIWARMVE KNVKRDIRSY NARLLGLAME NKSEEMVSLF DKLKGNELKP DVFTFTAMIK GFVSEGKLDE
301: AITWYKEIEK NGCRPLKFVF NSLLPAICKA GDLESAYELC KEIFAKRLLV DEAVLQEVVD ALVKGSKQDE AEEIVELAKT NDYLQCKLRL FPKE
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g13160, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LK57]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.