CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX80461
CDY05402
CDY05452
CDY69515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G36680.1	CDX80461	AT5G24660.1	21798944
AT4G36680.1	CDY05402	AT5G24660.1	21798944
AT4G36680.1	CDY05452	AT5G24660.1	21798944
AT4G36680.1	CDY69515	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24774	Canola	mitochondrion	95.82	95.82
AT4G36680.1	Thale cress	mitochondrion	77.15	76.21
CDY66741	Canola	mitochondrion	64.62	62.77
CDY67618	Canola	mitochondrion	64.62	62.77
PGSC0003DMT400090439	Potato	plastid	56.51	56.65
VIT_04s0023g01460.t01	Wine grape	mitochondrion	56.27	55.31
PGSC0003DMT400039992	Potato	cytosol	55.04	54.5
Solyc02g062910.1.1	Tomato	plastid	55.04	53.85
Solyc02g085550.1.1	Tomato	plastid	30.71	51.02
GSMUA_Achr1P01950_001	Banana	mitochondrion	39.07	41.19
Solyc02g085650.2.1	Tomato	plastid	56.51	35.6
Os02t0633200-01	Rice	mitochondrion	38.33	34.29
Zm00001d017317_P001	Maize	mitochondrion	38.82	33.55
TraesCS6A01G221200.1	Wheat	mitochondrion	36.85	32.47
TraesCS6D01G214000.1	Wheat	mitochondrion	36.85	32.47
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	30.71	32.3
TraesCS6B01G260000.1	Wheat	mitochondrion	36.61	32.25
EES05467	Sorghum	mitochondrion	36.61	31.84
HORVU6Hr1G059290.1	Barley	cytosol	36.85	31.18
CDY66550	Canola	mitochondrion	22.11	30.1
CDY38649	Canola	mitochondrion	27.52	28.87
CDY25328	Canola	mitochondrion, plastid	28.75	28.68
CDY47165	Canola	mitochondrion	28.5	28.43
CDY57688	Canola	mitochondrion	27.27	28.39
CDX97972	Canola	cytosol	19.41	28.32
CDY43367	Canola	mitochondrion	27.03	27.92
CDY37572	Canola	mitochondrion	27.27	27.89
CDY49792	Canola	plastid	27.76	27.7
CDY24208	Canola	mitochondrion	26.78	27.66
CDY54310	Canola	mitochondrion	26.54	27.62
CDY26081	Canola	mitochondrion	26.54	27.27
CDX82550	Canola	mitochondrion	26.29	27.23
CDY08267	Canola	mitochondrion	26.54	27.2
CDY07260	Canola	cytosol	10.07	26.8
CDY43368	Canola	plastid	25.31	23.46
CDY24210	Canola	plastid	25.06	23.29

Protein Annotations

EnsemblPlants:CDY35471	EnsemblPlantsGene:GSBRNA2T00058493001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF506
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY35471	ProteinID:CDY35471.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EE9A0D	UniProt:A0A078HCJ1	MapMan:35.1	:

Description

BnaC03g61890DBnaC03g61890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCJ1]

Coordinates

chrLK032352:-:331977..333200

Molecular Weight (calculated)

46059.4 Da

IEP (calculated)

9.582

GRAVY (calculated)

-0.460

Length

407 amino acids

Sequence
(BLAST)

001: MAASRLSLRY IRRFTTTTGD SATTVVESTK ISASKAKRIL RKQQDPDKAL EIYSNVSNHS ASPVSSRYAQ ELTVRRLSKC NRFSDIEALI ESHKDDPRIK
101: EEPFYSTLIR SYGRASMLDH AIKAFEEMGR HETPRTAVSF NALLTACLNS RKFEKVPQLF DEMPQRYSTI VPDRVSYGIL IKSYCDAGSP EKAIEIMREM
201: EGKRNMEVTT IAFTTILGSL YKNGKVELAE SLWNEMVKKG CEIDSAAYNV RLMNAQKEGP ERVWELIEEM SVKGLKPDTI SYNYLMTAYC EKGMLDEAKK
301: VFEGLKRNRC APNAATFRTL VFHLCDSGLY EQGYAIFKKS VGMNKIPDFN TLQHLAVGLV RNKKVNDAKG LIRTVKKKFP PSFLNAWKKL EEELGLDTKT
401: DASSTPA

Best Arabidopsis Sequence Match ( AT4G36680.1 )
(BLAST)

001: MASSRISLRL VRRFASAAAD GTTTAPSSGK ISVSKAKSTL RKEHDPDKAL KIYANVSDHS ASPVSSRYAQ ELTVRRLAKC RRFSDIETLI ESHKNDPKIK
101: EEPFYSTLIR SYGQASMFNH AMRTFEQMDQ YGTPRSAVSF NALLNACLHS KNFDKVPQLF DEIPQRYNKI IPDKISYGIL IKSYCDSGTP EKAIEIMRQM
201: QGKGMEVTTI AFTTILSSLY KKGELEVADN LWNEMVKKGC ELDNAAYNVR IMSAQKESPE RVKELIEEMS SMGLKPDTIS YNYLMTAYCE RGMLDEAKKV
301: YEGLEGNNCA PNAATFRTLI FHLCYSRLYE QGYAIFKKSV YMHKIPDFNT LKHLVVGLVE NKKRDDAKGL IRTVKKKFPP SFLNAWKKLE EELGLYSKTD
401: AFPSSAKEAA AA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M065]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.