CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017317_P001	Maize	mitochondrion	88.68	88.11
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	55.56	67.18
TraesCS6A01G221200.1	Wheat	mitochondrion	65.81	66.67
TraesCS6B01G260000.1	Wheat	mitochondrion	65.81	66.67
TraesCS6D01G214000.1	Wheat	mitochondrion	65.38	66.23
Os02t0633200-01	Rice	mitochondrion	63.25	65.05
HORVU6Hr1G059290.1	Barley	cytosol	65.81	64.03
GSMUA_Achr1P01950_001	Banana	mitochondrion	37.39	45.34
VIT_04s0023g01460.t01	Wine grape	mitochondrion	33.33	37.68
Bra037216.1-P	Field mustard	mitochondrion	33.55	37.47
CDY67618	Canola	mitochondrion	33.33	37.23
CDY66741	Canola	mitochondrion	33.33	37.23
AT2G18520.1	Thale cress	mitochondrion	32.91	36.84
PGSC0003DMT400090439	Potato	plastid	31.84	36.7
CDY35471	Canola	mitochondrion	31.84	36.61
Solyc02g062910.1.1	Tomato	plastid	31.84	35.82
AT4G36680.1	Thale cress	mitochondrion	31.2	35.44
CDY24774	Canola	mitochondrion	30.77	35.38
Bra010568.1-P	Field mustard	mitochondrion	30.77	35.38
PGSC0003DMT400039992	Potato	cytosol	30.77	35.04
Solyc02g085550.1.1	Tomato	plastid	17.09	32.65
EES01589	Sorghum	mitochondrion	23.08	27.55
EER91465	Sorghum	mitochondrion	24.79	26.36
EES07814	Sorghum	mitochondrion, plastid	22.22	24.82
Solyc02g085650.2.1	Tomato	plastid	33.33	24.15
EES01580	Sorghum	mitochondrion	21.15	22.55
EES01579	Sorghum	mitochondrion	20.09	21.91
EES15434	Sorghum	plastid	21.37	21.51
EER95222	Sorghum	mitochondrion	20.51	19.47

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8066184	UniProt:C5XY60	EnsemblPlants:EES05467	ProteinID:EES05467
ProteinID:EES05467.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1042	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G223800	SUPFAM:SSF48452
unigene:Sbi.6119	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A85437	RefSeq:XP_002452491.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:+:57449660..57452378

Molecular Weight (calculated)

50993.5 Da

IEP (calculated)

5.879

GRAVY (calculated)

-0.307

Length

468 amino acids

Sequence
(BLAST)

001: MAALATLLRH GRRTHAHGRR LSSALSTTTG GTDPGATPFS DAKRQLRRER DPDRVVSILD AIDTASISAA STRHALSLAA RRLSLSRRFA EAEALLSSHL
101: TASNTETHLA AVLCCYAAAN LPEKAIDAFR SAAPSLPAPI SPLPFNALLS TFVRCRRYRR VPVLFAELSK EFSITPDATS YAILVKAYCM NRDDAKAKQV
201: LDLMREQGIS PTASIYTSLI DSMYKRKMTN EAESLWKEMV ESGCEPDVVT YNVKALYYMA HGKPEEVIEV MTEMEAAGLK PNTITYNYLM ISYCKSGKLE
301: DAKVLYHSLA EKGCSADAYT YKHMLAELCA HGDFDAGLGI FKDSLKKRKV PDFRTMKRLV EGLAKGGRVA DAKEVIAEVK NMFPENLLSG WKKVEKELGL
401: DSDSGGTPQS EVTSGETVAE VRPDAAETEA LELEGSATEE TAVSEESSDD EASVPEASSS EEVPQGRA

Best Arabidopsis Sequence Match ( AT2G18520.1 )
(BLAST)

001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU67]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.