Factsheet for Zm00001d017317_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
plastid: 22065420
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05467	Sorghum	mitochondrion	88.11	88.68
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	57.11	69.51
TraesCS6A01G221200.1	Wheat	mitochondrion	67.09	68.4
TraesCS6D01G214000.1	Wheat	mitochondrion	66.88	68.18
TraesCS6B01G260000.1	Wheat	mitochondrion	66.88	68.18
Os02t0633200-01	Rice	mitochondrion	64.76	67.03
HORVU6Hr1G059290.1	Barley	cytosol	67.09	65.7
GSMUA_Achr1P01950_001	Banana	mitochondrion	38.64	47.15
VIT_04s0023g01460.t01	Wine grape	mitochondrion	35.03	39.86
Bra037216.1-P	Field mustard	mitochondrion	35.03	39.38
CDY67618	Canola	mitochondrion	34.82	39.14
CDY66741	Canola	mitochondrion	34.82	39.14
CDY35471	Canola	mitochondrion	33.55	38.82
PGSC0003DMT400090439	Potato	plastid	33.33	38.67
AT2G18520.1	Thale cress	mitochondrion	33.97	38.28
Bra010568.1-P	Field mustard	mitochondrion	32.48	37.59
CDY24774	Canola	mitochondrion	32.27	37.35
AT4G36680.1	Thale cress	mitochondrion	32.06	36.65
Solyc02g062910.1.1	Tomato	plastid	32.06	36.3
PGSC0003DMT400039992	Potato	cytosol	31.21	35.77
Solyc02g085550.1.1	Tomato	plastid	17.41	33.47
Zm00001d043225_P001	Maize	mitochondrion	22.08	26.46
Zm00001d032661_P001	Maize	mitochondrion	23.99	25.8
Zm00001d006609_P001	Maize	cytosol	16.77	25.32
Solyc02g085650.2.1	Tomato	plastid	34.61	25.23
Zm00001d018534_P001	Maize	mitochondrion	22.29	25.06
Zm00001d014711_P001	Maize	cytosol	15.07	25.0
Zm00001d012606_P001	Maize	mitochondrion	21.87	22.74
Zm00001d013990_P001	Maize	mitochondrion, plastid	12.1	22.44
Zm00001d031321_P001	Maize	mitochondrion	21.44	22.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100191780	MapMan:35.1	ProteinID:AQK72908.1	UniProt:B4G0H5	EMBL:BT042863
EMBL:EU961913	EMBL:EU974035	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1042
InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B8127	EnsemblPlantsGene:Zm00001d017317	EnsemblPlants:Zm00001d017317_P001
EnsemblPlants:Zm00001d017317_T001	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr5:+:192510272..192511687

Molecular Weight (calculated)

51397.1 Da

IEP (calculated)

5.426

GRAVY (calculated)

-0.276

Length

471 amino acids

Sequence
(BLAST)

001: MAALATLLRH SRRSHAHVLP ISRALSTTTP TTGGTDPVAI TLSDAKRQLL RERDPDRVVS ILDAIDTASI SAASTRHALS LAARRLSRSR RFADAEALLS
101: SHLTASTTEA HLAAVLCSYA SANLPEKAID AFRSAAPSLP TPNSPLPFNA LLSTFIRCRR YRRVPVLFAE LSKEFSITPN ATSYGILVKA YCMARDDAKA
201: KQALDLMREQ GISPTNRIYT TLIDSMYKRK MTNEAESLWK EMVESECEPD VATYNVKAMY YALHGKPEEV MEVMTEMEAA GVKPDTTTYN FLMTSYCKSG
301: KLEDAKVLYH SLAEKGCSAD AATYKHMLAE LCAYGDFDAG LGIFKDSLKR RKVPDFRTMK GLVEGLAKGG RVADAKEVVA EVKKMFPENL LSGWKKVEKE
401: LGLDSDSGET PLLEVTSGET VAEVRPDAAE VEALELEGSA AEEVTVSEES SDDEAYVPEA SSSEEVPQGR A

Best Arabidopsis Sequence Match ( AT2G18520.1 )
(BLAST)

001: MTSSRLYLRF LRRFSTATGI DSQTTAYPGA ITMSKAKSKL RKVQDPDKAL AIYKSVSNNS TSPLSSRYAM ELTVQRLAKS QRFSDIEALI ESHKNNPKIK
101: TETFLSTLIR SYGRASMFDH AMKMFEEMDK LGTPRTVVSF NALLAACLHS DLFERVPQLF DEFPQRYNNI TPDKISYGML IKSYCDSGKP EKAMEIMRDM
201: EVKGVEVTII AFTTILGSLY KNGLVDEAES LWIEMVNKGC DLDNTVYNVR LMNAAKESPE RVKELMEEMS SVGLKPDTVS YNYLMTAYCV KGMMSEAKKV
301: YEGLEQPNAA TFRTLIFHLC INGLYDQGLT VFKKSAIVHK IPDFKTCKHL TEGLVKNNRM EDARGVARIV KKKFPPRLVT EWKKLEEKLG LYSKGNAAAV
401: SSSSQTREVL DQEREDDV

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18520, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU67]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.