Factsheet for Zm00001d013990_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91465	Sorghum	mitochondrion	74.41	42.95
Zm00001d032661_P001	Maize	mitochondrion	72.44	42.01
Os10t0484900-00	Rice	mitochondrion	66.93	39.72
TraesCS1B01G176200.1	Wheat	mitochondrion	66.54	39.67
HORVU1Hr1G042520.2	Barley	mitochondrion	66.14	37.33
TraesCS1A01G160400.1	Wheat	cytosol	15.75	18.26
Zm00001d018534_P001	Maize	mitochondrion	29.53	17.9
GSMUA_Achr9P20670_001	Banana	cytosol, mitochondrion	18.9	17.52
VIT_01s0010g01460.t01	Wine grape	mitochondrion	24.41	16.06
Zm00001d031321_P001	Maize	mitochondrion	23.23	12.85
Zm00001d006609_P001	Maize	cytosol	15.75	12.82
Zm00001d043225_P001	Maize	mitochondrion	19.68	12.72
Zm00001d012606_P001	Maize	mitochondrion	21.65	12.14
Zm00001d017317_P001	Maize	mitochondrion	22.44	12.1
Zm00001d014711_P001	Maize	cytosol	12.6	11.27

Protein Annotations

EnsemblPlants:Zm00001d013990_P001	EnsemblPlants:Zm00001d013990_T001	EnsemblPlantsGene:Zm00001d013990	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF559	PFAM:PF01535	ProteinID:AQK65004.1	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000843589B
UniProt:A0A1D6GPA5	MapMan:35.2	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr5:+:27690835..27692098

Molecular Weight (calculated)

26288.2 Da

IEP (calculated)

8.742

GRAVY (calculated)

-0.024

Length

254 amino acids

Sequence
(BLAST)

001: MVVGSTLRRA SDGSGNALGG AACGATSSSP ALVVAAAGAR AVGGGRAIAH IYSLVASALS SDDFPRLHTS RQLFSLATSR LNRLRRPDLA ASLLDLLLAS
101: APPSPGLLAR ALSLYPGPDD ALRAFSSSAP ATRSDVSLSA FLRAGRLDDI KSTITLAESS HGVTPGRASH NVLLHALVKN SELAAARMLL DEMANNKSKH
201: RPAPDIISYN TVLAGCSVQD DEEGFEKLLN EISLNKPDTV VLQERRDSQG GGAA

Best Arabidopsis Sequence Match ( AT1G63070.1 )
(BLAST)

001: MMRSVAVIGK KCLHRHTVLL KGNPRTTLCW ERSFAGASSD DCRENLSRKV LQDLKLDDAI GLFGDMVKSR PFPSIVEFSK LLSAIAKMNK FDLVISLGEQ
101: MQNLGISHNL YTYSIFINYF CRRSQLSLAL AILGKMMKLG YGPSIVTLNS LLNGFCHGNR ISEAVALVDQ MVEMGYQPDT VTFTTLVHGL FQHNKASEAV
201: ALVERMVVKG CQPDLVTYGA VINGLCKRGE PDLALNLLNK MEKGKIEADV VIYNTIIDGL CKYKHMDDAF DLFNKMETKG IKPDVFTYNP LISCLCNYGR
301: WSDASRLLSD MLEKNINPDL VFFNALIDAF VKEGKLVEAE KLYDEMVKSK HCFPDVVAYN TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYTTLIHG
401: FFQARDCDNA QMVFKQMVSD GVHPDIMTYN ILLDGLCNNG NVETALVVFE YMQKRDMKLD IVTYTTMIEA LCKAGKVEDG WDLFCSLSLK GVKPNVVTYT
501: TMMSGFCRKG LKEEADALFV EMKEDGPLPN SGTYNTLIRA RLRDGDEAAS AELIKEMRSC GFAGDASTFG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g63070, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9CAN6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.