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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 2
  • mitochondrion 6
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:mitochondrion
YLoc:mitochondrion
 mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES01589 Sorghum mitochondrion 94.91 95.15
Os01t0793200-01 Rice mitochondrion 82.95 83.59
TraesCS3B01G355800.1 Wheat mitochondrion 81.17 81.79
TraesCS3A01G326500.1 Wheat mitochondrion 80.92 81.54
TraesCS3D01G319900.1 Wheat mitochondrion 69.72 81.07
HORVU3Hr1G077780.1 Barley mitochondrion 79.39 80.0
GSMUA_Achr6P00410_001 Banana mitochondrion 52.93 59.09
HORVU5Hr1G041750.1 Barley cytosol 48.35 53.52
CDY07260 Canola cytosol 19.85 50.98
KRH11411 Soybean nucleus 48.09 48.71
AT1G61870.1 Thale cress mitochondrion 47.84 46.08
PGSC0003DMT400029367 Potato mitochondrion 47.07 46.02
Solyc10g005280.1.1 Tomato mitochondrion 47.07 46.02
VIT_10s0116g00030.t01 Wine grape plastid 45.8 45.45
CDY25328 Canola mitochondrion, plastid 47.07 45.34
CDY47165 Canola mitochondrion 46.82 45.1
Bra028380.1-P Field mustard mitochondrion 46.82 45.1
VIT_10s0116g00090.t01 Wine grape mitochondrion 27.99 43.14
AT1G11630.1 Thale cress mitochondrion 42.24 40.99
KRH20872 Soybean mitochondrion 18.32 40.91
CDX97972 Canola cytosol 28.24 39.78
Bra019842.1-P Field mustard cytosol 28.24 39.78
CDY49792 Canola plastid 40.71 39.22
KRH20873 Soybean cytosol, mitochondrion 11.96 37.01
Zm00001d006609_P001 Maize cytosol 21.88 27.56
Zm00001d014711_P001 Maize cytosol 19.59 27.11
Zm00001d018534_P001 Maize mitochondrion 26.97 25.3
Zm00001d032661_P001 Maize mitochondrion 25.95 23.29
Zm00001d012606_P001 Maize mitochondrion 25.95 22.52
Zm00001d031321_P001 Maize mitochondrion 25.95 22.22
Zm00001d017317_P001 Maize mitochondrion 26.46 22.08
Zm00001d013990_P001 Maize mitochondrion, plastid 12.72 19.68
Protein Annotations
Gene3D:1.25.40.10EntrezGene:100273462MapMan:17.7.1.3.2UniProt:B4FVQ0EMBL:BT041188GO:GO:0003674
GO:GO:0005488GO:GO:0005515InterPro:IPR002885InterPro:IPR011990ProteinID:ONM37228.1PFAM:PF01535
PFAM:PF12854PFAM:PF13041PFscan:PS51375PANTHER:PTHR24015PANTHER:PTHR24015:SF579InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI00017B7CECEnsemblPlantsGene:Zm00001d043225EnsemblPlants:Zm00001d043225_P001EnsemblPlants:Zm00001d043225_T001
SEG:seg:::::
Description
Pentatricopeptide repeat-containing protein mitochondrial
Coordinates
chr3:-:192392374..192393555
Molecular Weight (calculated)
43190.2 Da
IEP (calculated)
9.151
GRAVY (calculated)
-0.176
Length
393 amino acids
Sequence
(BLAST)
001: MAAAVRHIVR RRLSTAAAIT APVPTPASIL NPSSPSTPLT SRHKTRLAIS LLKSSPPPPP DQILSICRAA ALTPETHIDR IALSLAASKL SSAPDTLRDL
101: ASTVLTPRHA PHAIALFGQA HLLPDAISTF QSSPSTRSLN ALIFACIVSG NHTEAARVFQ TFPDAHGVKP NTETFNAIIK SFAESGTIRS FYSVFDEMCK
201: KGLKPNSITF TTALAGFYKE EKFDDIKKVL ELMKKNGCGE SLPVYNVRVQ SLCKLGRSGE ARALVDEMMK KGTKPNWVTY NHLIYGFCKE GDLEEAKRLY
301: KEMGRKGLVG DSDFYFMLIY YLCKGDDLDT ALGLYNEIAA KNWVPCFSTM KMLVNGLAGS SRIDEAKGII EKMKEKFPDK TEGWKEVEEA FPH
Best Arabidopsis Sequence Match ( AT1G61870.1 )
(BLAST)
001: MALLSRIRSS TSLFRHLNAS PQIRSLSSAS TILSPDSKTP LTSKEKSKAA LSLLKSEKDP DRILEICRAA SLTPDCRIDR IAFSAAVENL AEKKHFSAVS
101: NLLDGFIENR PDLKSERFAA HAIVLYAQAN MLDHSLRVFR DLEKFEISRT VKSLNALLFA CLVAKDYKEA KRVYIEMPKM YGIEPDLETY NRMIKVFCES
201: GSASSSYSIV AEMERKGIKP NSSSFGLMIS GFYAEDKSDE VGKVLAMMKD RGVNIGVSTY NIRIQSLCKR KKSKEAKALL DGMLSAGMKP NTVTYSHLIH
301: GFCNEDDFEE AKKLFKIMVN RGCKPDSECY FTLIYYLCKG GDFETALSLC KESMEKNWVP SFSIMKSLVN GLAKDSKVEE AKELIGQVKE KFTRNVELWN
401: EVEAALPQ
Arabidopsis Description
PPR336Pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LE47]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.