Factsheet for Bra019842.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97972	Canola	cytosol	99.28	99.28
AT1G11630.1	Thale cress	mitochondrion	73.48	50.62
GSMUA_Achr11P...	Banana	cytosol	34.77	49.74
Bra028380.1-P	Field mustard	mitochondrion	62.37	42.65
KRH20873	Soybean	cytosol, mitochondrion	17.2	37.8
VIT_10s0116g00030.t01	Wine grape	plastid	51.97	36.62
Solyc10g005280.1.1	Tomato	mitochondrion	51.61	35.82
GSMUA_Achr6P00410_001	Banana	mitochondrion	44.44	35.23
PGSC0003DMT400029367	Potato	mitochondrion	50.54	35.07
KRH11411	Soybean	nucleus	47.31	34.02
TraesCS3A01G326500.1	Wheat	mitochondrion	41.58	29.74
Os01t0793200-01	Rice	mitochondrion	41.58	29.74
TraesCS3B01G355800.1	Wheat	mitochondrion	40.86	29.23
EES01589	Sorghum	mitochondrion	39.78	28.32
Zm00001d043225_P001	Maize	mitochondrion	39.78	28.24
HORVU3Hr1G077780.1	Barley	mitochondrion	39.43	28.21
TraesCS3D01G319900.1	Wheat	mitochondrion	33.33	27.51
VIT_10s0116g00090.t01	Wine grape	mitochondrion	23.3	25.49
Bra039373.1-P	Field mustard	cytosol	24.73	25.18
HORVU5Hr1G041750.1	Barley	cytosol	29.03	22.82
Bra003553.1-P	Field mustard	mitochondrion	29.39	20.97
KRH20872	Soybean	mitochondrion	12.54	19.89
Bra008492.1-P	Field mustard	mitochondrion	27.6	19.64
Bra010568.1-P	Field mustard	mitochondrion	27.96	19.16
Bra037216.1-P	Field mustard	mitochondrion	27.6	18.38
Bra001492.1-P	Field mustard	mitochondrion	26.16	18.25
Bra037096.1-P	Field mustard	mitochondrion	25.45	17.88
Bra039372.1-P	Field mustard	cytosol, plastid	29.39	17.15

Protein Annotations

Gene3D:1.25.40.10	MapMan:17.7.1.3.2	EnsemblPlantsGene:Bra019842	EnsemblPlants:Bra019842.1	EnsemblPlants:Bra019842.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DTJ9	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF579	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000253EB87	SEG:seg	:	:	:

Description

AT1G11630 (E=3e-113) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:-:4054532..4055371

Molecular Weight (calculated)

32276.1 Da

IEP (calculated)

8.004

GRAVY (calculated)

-0.275

Length

279 amino acids

Sequence
(BLAST)

001: MLERSLQTFH DLERYEIQRT VKSLNALLLA CLAARDYEEA RRVYFETRKE YGGIEPDLET YNRIIKALCE SNSTGSSYSI VAEMERRRVK PRASTFGLMI
101: EGFYKEEKYD EVRRVVRLMR EFGVHVGIAT YNVMVRCLCE RKRTREAKAL LCGVMSTRMR PNSVTYSLLI HGFCSEGDLD EAMSVFEVMV KSGCKPGCEC
201: YFDLIRCLCK GGDFETALVL CRESMENHWV PSFSVMRWLV HGLVGSNKVD EAREVIAQVK HKFSRNVHLW NQVEADLSR

Best Arabidopsis Sequence Match ( AT1G11630.1 )
(BLAST)

001: MAFLFRIRTS EFILQKATQF RLKSSSSSIF TLKSLTSKQK KSRDTLSLLK SENNPDRILE ICRSTSLSPD YHVDRIIFSV AVVTLAREKH FVAVSQLLDG
101: FIQNQPDPKS ESFAVRAIIL YGRANMLDRS IQTFRNLEQY EIPRTVKSLN ALLFACLMAK DYKEANRVYL EMPKMYGIEP DLETYNRMIR VLCESGSTSS
201: SYSIVAEMER KWIKPTAASF GLMIDGFYKE EKFDEVRKVM RMMDEFGVHV GVATYNIMIQ CLCKRKKSAE AKALIDGVMS CRMRPNSVTY SLLIHGFCSE
301: ENLDEAMNLF EVMVCNGYKP DSECYFTLIH CLCKGGDFET ALILCRESME KNWVPSFSVM KWLVNGLASR SKVDEAKELI AVVKEKFTRN VDLWNEVEAA
401: LPLPQ

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g11630, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAB4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.