Factsheet for Bra039372.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43368	Canola	plastid	89.54	97.49
CDY24210	Canola	plastid	87.66	95.66
AT3G13150.1	Thale cress	plastid	69.67	60.44
VIT_00s0271g00050.t01	Wine grape	mitochondrion	23.01	48.46
VIT_00s0271g00070.t01	Wine grape	mitochondrion	35.98	45.38
VIT_00s0271g00040.t01	Wine grape	cytosol	18.41	43.14
Bra039373.1-P	Field mustard	cytosol	23.01	40.15
PGSC0003DMT400055889	Potato	plastid	32.01	38.93
Solyc02g079830.1.1	Tomato	mitochondrion	31.8	38.0
Bra037096.1-P	Field mustard	mitochondrion	31.38	37.78
PGSC0003DMT400055888	Potato	mitochondrion	29.5	37.4
Bra001492.1-P	Field mustard	mitochondrion	30.54	36.5
Solyc02g079820.2.1	Tomato	cytosol, plastid	23.01	35.14
PGSC0003DMT400071165	Potato	extracellular	11.3	30.68
Bra019842.1-P	Field mustard	cytosol	17.15	29.39
GSMUA_Achr10P...	Banana	mitochondrion	24.48	29.18
Bra003553.1-P	Field mustard	mitochondrion	22.59	27.62
HORVU3Hr1G077400.1	Barley	cytosol	21.76	27.15
Bra008492.1-P	Field mustard	mitochondrion	21.97	26.79
EES01579	Sorghum	mitochondrion	23.43	26.11
TraesCS3B01G353300.1	Wheat	plastid	22.8	26.08
TraesCS3B01G361800.1	Wheat	plastid	23.64	25.74
Os01t0785700-01	Rice	mitochondrion	23.22	25.58
Zm00001d012606_P001	Maize	mitochondrion	24.06	25.39
Bra028380.1-P	Field mustard	mitochondrion	21.55	25.25
Bra010568.1-P	Field mustard	mitochondrion	21.34	25.06
TraesCS3A01G331600.1	Wheat	plastid	24.06	25.05
EES01580	Sorghum	mitochondrion	22.8	24.83
TraesCS3A01G324300.1	Wheat	plastid	22.38	24.77
TraesCS3D01G325200.1	Wheat	plastid	23.01	24.5
TraesCS3A01G331700.1	Wheat	plastid	21.34	23.89
Bra037216.1-P	Field mustard	mitochondrion	20.92	23.87
TraesCS3A01G324200.1	Wheat	plastid	22.59	23.74
TraesCS3D01G317700.1	Wheat	plastid	23.43	23.73
EER95222	Sorghum	mitochondrion	24.06	23.33
HORVU6Hr1G019320.1	Barley	plastid	22.59	23.28
TraesCS3A01G324500.1	Wheat	plastid	22.38	22.62
HORVU3Hr1G077440.2	Barley	mitochondrion	21.97	21.38
TraesCS3B01G353500.1	Wheat	plastid	22.18	21.07
TraesCS3D01G317800.1	Wheat	plastid	21.55	20.48

Protein Annotations

EnsemblPlants:Bra039372.1	EnsemblPlants:Bra039372.1-P	EnsemblPlantsGene:Bra039372	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1052	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI000253E931	UniProt:M4FE51	MapMan:35.1	:	:

Description

AT3G13150 (E=4e-177) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrScaffold000164:-:172587..174109

Molecular Weight (calculated)

54127.7 Da

IEP (calculated)

9.450

GRAVY (calculated)

-0.653

Length

478 amino acids

Sequence
(BLAST)

001: MQSPHSSLSK TQNPHTRIST CTKSNEQSGI LAVLSPPWNL QNPEPKPNPH RQDHRKTQNP NQISTVKTTA KPRTQTKSKK FVNKSKKPTA SPASVAGGDA
101: VTSSNDSKPT KDSNLTKKVE KFKRSCESQS FRQVHGLYSA FIRRLREANK FSIIDEVLQH QKKYDDIKSE DFVIRMMLLY GYSGMADHAH KLFDEMPELN
201: CERTNKSFNA LLSAYVNSRK VDEAMKVFKE LPEKLGITPD LVTYNTMIKA VCRKGSMEDI LSILEEVERN GLEPDMITFN TLLEEFYRRD LFAEGDRIWD
301: LMKSKDLVPN IRSYNSRVRG LTRNKKFADA VELTGVMRAE GISPDVHTYN AFITGYRGDN NIEEALKWYD EMKENRLVPD TVTYCLLIPL VCKKGDLDRA
401: VEMSEEAIRH KVLSRPNMYK PVIDGLVGEG KIDKAMQLVK DGKLQSYFRY LPGLSTGKKD TATVPVSSSP VEASVGDE

Best Arabidopsis Sequence Match ( AT3G13150.1 )
(BLAST)

001: MSKVGSSLYS RLHGIFKESS IATAKSAKPR SQTKSTKFPS KLKASTASVG DGGQSSNDAK DSKNSKLTQK VEKFKRSCES ESFRQVHGLY SAFIRRLREA
101: KKFSTIDEVL QYQKKFDDIK SEDFVIRIML LYGYSGMAEH AHKLFDEMPE LNCERTVKSF NALLSAYVNS KKLDEAMKTF KELPEKLGIT PDLVTYNTMI
201: KALCRKGSMD DILSIFEELE KNGFEPDLIS FNTLLEEFYR RELFVEGDRI WDLMKSKNLS PNIRSYNSRV RGLTRNKKFT DALNLIDVMK TEGISPDVHT
301: YNALITAYRV DNNLEEVMKC YNEMKEKGLT PDTVTYCMLI PLLCKKGDLD RAVEVSEEAI KHKLLSRPNM YKPVVERLMG AGKIDEATQL VKNGKLQSYF
401: RYLPDLSAGK KKTTSSPVSS SAKTTSTPVS SSPDTSSFLL SLSLAADSSS SDSDSSSPDS SSSVSSSPDS SSSVSSSPDS YSSFSSSPDS SSSVSSSLFS
501: SSRENSSSPD YSNSVSSSLD YSGSVSSSSD YSSSVFPSAN SSSSSSGLLD D

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g13150 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK58]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.