Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055888 | Potato | mitochondrion | 65.34 | 30.5 |
| VIT_00s0271g00040.t01 | Wine grape | cytosol | 31.25 | 26.96 |
| PGSC0003DMT400055889 | Potato | plastid | 52.84 | 23.66 |
| PGSC0003DMT400012953 | Potato | cytosol | 34.09 | 15.83 |
| VIT_00s0271g00070.t01 | Wine grape | mitochondrion | 32.95 | 15.3 |
| GSMUA_Achr10P... | Banana | mitochondrion | 33.52 | 14.71 |
| HORVU3Hr1G077400.1 | Barley | cytosol | 31.82 | 14.62 |
| Zm00001d012606_P001 | Maize | mitochondrion | 35.23 | 13.69 |
| EES01580 | Sorghum | mitochondrion | 34.09 | 13.67 |
| TraesCS3B01G353300.1 | Wheat | plastid | 30.11 | 12.68 |
| Os01t0785700-01 | Rice | mitochondrion | 31.25 | 12.67 |
| CDY24210 | Canola | plastid | 30.68 | 12.33 |
| CDY43368 | Canola | plastid | 30.68 | 12.3 |
| TraesCS3A01G324300.1 | Wheat | plastid | 30.11 | 12.27 |
| TraesCS3A01G324500.1 | Wheat | plastid | 32.95 | 12.26 |
| TraesCS3A01G324200.1 | Wheat | plastid | 31.25 | 12.09 |
| TraesCS3D01G317700.1 | Wheat | plastid | 32.39 | 12.08 |
| HORVU3Hr1G077440.2 | Barley | mitochondrion | 33.52 | 12.02 |
| HORVU6Hr1G019320.1 | Barley | plastid | 31.25 | 11.85 |
| TraesCS3A01G331700.1 | Wheat | plastid | 28.41 | 11.71 |
| EES01579 | Sorghum | mitochondrion | 28.41 | 11.65 |
| TraesCS3D01G325200.1 | Wheat | plastid | 29.55 | 11.58 |
| EER95222 | Sorghum | mitochondrion | 32.39 | 11.56 |
| TraesCS3B01G353500.1 | Wheat | plastid | 32.95 | 11.53 |
| TraesCS3B01G361800.1 | Wheat | plastid | 28.41 | 11.39 |
| TraesCS3A01G331600.1 | Wheat | plastid | 29.55 | 11.33 |
| Bra039372.1-P | Field mustard | cytosol, plastid | 30.68 | 11.3 |
| TraesCS3D01G317800.1 | Wheat | plastid | 31.82 | 11.13 |
| PGSC0003DMT400039992 | Potato | cytosol | 25.0 | 10.71 |
| PGSC0003DMT400090439 | Potato | plastid | 24.43 | 10.59 |
| PGSC0003DMT400029367 | Potato | mitochondrion | 23.3 | 10.2 |
| PGSC0003DMT400072924 | Potato | mitochondrion | 23.3 | 10.12 |
| AT3G13150.1 | Thale cress | plastid | 30.68 | 9.8 |
| VIT_00s0271g00050.t01 | Wine grape | mitochondrion | 12.5 | 9.69 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071165 | EnsemblPlantsGene:PGSC0003DMG400027677 | EntrezGene:107058870 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF1622 | PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | PGSC:PGSC0003DMG400027677 | RefSeq:XP_015160560.1 |
| SUPFAM:SSF81901 | TIGRFAMs:TIGR00756 | UniParc:UPI0002961647 | UniProt:M1CNA7 | MapMan:35.1 | : |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027677]
Coordinates
chr6:-:57826539..57827916
Molecular Weight (calculated)
20037.5 Da
IEP (calculated)
4.924
GRAVY (calculated)
-0.062
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MKALCKAGSV YSAVLLIDEI EKHGIKPDIV TCNTLLKALC DSKRFSEAEN LWVMMEKRSI LPDICSYDIR LRGLLKVAEV SKAIQLFEEI VKKGFKPDKF
101: SYDNMIKVYV DEGNLEQANM WYQKMVQNDC LPDSATFHML IPLACDMKKI DFALHLCTKA IDSQVLEDEV CTSSEE
101: SYDNMIKVYV DEGNLEQANM WYQKMVQNDC LPDSATFHML IPLACDMKKI DFALHLCTKA IDSQVLEDEV CTSSEE
001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.