Factsheet for TraesCS3A01G324300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G327000.1
TraesCS2B01G355000.6
TraesCS2D01G335900.1
TraesCS6A01G208300.2
TraesCS6A01G274500.1
TraesCS6B01G236800.1
TraesCS6B01G302000.1
TraesCS6D01G191900.3
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT1G55890.1	TraesCS2A01G327000.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS2B01G355000.6	AT4G24690.1	21798944
AT1G55890.1	TraesCS2D01G335900.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6A01G208300.2	AT4G24690.1	21798944
AT1G55890.1	TraesCS6B01G236800.1	AT4G24690.1	21798944
AT1G55890.1	TraesCS6D01G191900.3	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G324200.1	Wheat	plastid	92.59	87.91
HORVU3Hr1G077400.1	Barley	cytosol	69.68	78.59
TraesCS3A01G324500.1	Wheat	plastid	80.56	73.57
TraesCS3A01G331600.1	Wheat	plastid	74.31	69.93
TraesCS3A01G331700.1	Wheat	plastid	66.67	67.45
Os01t0785700-01	Rice	mitochondrion	60.42	60.14
EES01580	Sorghum	mitochondrion	54.17	53.3
Zm00001d012606_P001	Maize	mitochondrion	55.32	52.76
EES01579	Sorghum	mitochondrion	50.69	51.05
EER95222	Sorghum	mitochondrion	55.32	48.48
GSMUA_Achr10P...	Banana	mitochondrion	43.29	46.63
VIT_00s0271g00080.t01	Wine grape	mitochondrion	32.18	38.29
VIT_00s0271g00040.t01	Wine grape	cytosol	18.06	38.24
VIT_00s0274g00040.t01	Wine grape	mitochondrion	33.56	37.96
VIT_00s0271g00070.t01	Wine grape	mitochondrion	32.87	37.47
VIT_00s0271g00050.t01	Wine grape	mitochondrion	19.68	37.44
PGSC0003DMT400012953	Potato	cytosol	31.48	35.88
Solyc03g031460.1.1	Tomato	plastid	31.02	35.36
AT1G55890.1	Thale cress	mitochondrion	30.79	33.42
CDY26081	Canola	mitochondrion	30.56	33.33
KRH41973	Soybean	nucleus	28.94	32.81
CDY08267	Canola	mitochondrion	30.09	32.75
Bra037096.1-P	Field mustard	mitochondrion	30.09	32.75
Bra039373.1-P	Field mustard	cytosol	20.6	32.48
CDY66550	Canola	mitochondrion	22.45	32.44
PGSC0003DMT400055888	Potato	mitochondrion	28.24	32.36
CDX82550	Canola	mitochondrion	28.7	31.55
KRH49916	Soybean	cytosol	28.94	31.25
CDY24208	Canola	mitochondrion	28.47	31.22
AT3G13160.1	Thale cress	mitochondrion	28.24	30.96
CDY43367	Canola	mitochondrion	28.24	30.96
PGSC0003DMT400055889	Potato	plastid	27.78	30.53
Bra001492.1-P	Field mustard	mitochondrion	28.24	30.5
PGSC0003DMT400071165	Potato	extracellular	12.27	30.11
Solyc02g079830.1.1	Tomato	mitochondrion	27.31	29.5
Solyc02g079820.2.1	Tomato	cytosol, plastid	19.91	27.48
TraesCS3A01G326500.1	Wheat	mitochondrion	24.77	27.44
CDY24210	Canola	plastid	25.23	24.89
CDY43368	Canola	plastid	25.23	24.83
TraesCS1A01G160400.1	Wheat	cytosol	12.5	24.66
Bra039372.1-P	Field mustard	cytosol, plastid	24.77	22.38
TraesCS7A01G240900.1	Wheat	mitochondrion, plastid	23.15	22.32
TraesCS6A01G221200.1	Wheat	mitochondrion	23.84	22.29
TraesCS6A01G233500.1	Wheat	cytosol, mitochondrion	19.68	21.96
AT3G13150.1	Thale cress	plastid	25.93	20.33

Protein Annotations

EnsemblPlants:TraesCS3A01G324300.1	EnsemblPlantsGene:TraesCS3A01G324300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1622
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr3A:+:569167597..569168961

Molecular Weight (calculated)

47028.0 Da

IEP (calculated)

7.296

GRAVY (calculated)

-0.317

Length

432 amino acids

Sequence
(BLAST)

001: MASASAAAAA TRANSLSRIF SSSSPTVKLP KRNPKTKRAP APPPKPSAAD ADSIAGQKLP EPLGVHPAAK AESDADHKLP KPLDDILIAL IRQRNPDKLV
101: SEFVQASTVS SRFRERHRVY EVAVSRLTSF GRQDGIEAII EAQKPFLETS DEGFAARLIR LYGRASMPSH ATATFHELPA QHKSTMTFNA LLAAYAEAGD
201: FDGLTAAFQE IPATHPSVVP SVYSYNILIR SLCQKPDLSA ALDVVLLMEK HGVSADIITF NTLLNGFCNN GPTDEAETVW EMMKERNLEP DAKCYNAKLR
301: GLVAEGRIDD AAAVLEGLEK DGPKPDTVSY NELIRGYCKA GRLQEAKKLY DDLAKNHCAA NKGTYETLVP HLLQAGDLDC ALRYCYEMFS GKRSGRVECG
401: VLQDVVNALV DASRVEEAGK LVDIGRKKHE RV

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.