Factsheet for Solyc03g031460.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc03g112230.2.1
Solyc06g071770.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55890.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT1G55890.1	Solyc03g112230.2.1	AT4G24690.1	21798944
AT1G55890.1	Solyc06g071770.2.1	AT4G24690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400012953	Potato	cytosol	96.57	96.57
VIT_00s0271g00080.t01	Wine grape	mitochondrion	52.24	54.55
VIT_00s0274g00040.t01	Wine grape	mitochondrion	54.62	54.19
Bra039373.1-P	Field mustard	cytosol	37.2	51.46
KRH41973	Soybean	nucleus	51.19	50.92
KRH49916	Soybean	cytosol	52.24	49.5
AT1G55890.1	Thale cress	mitochondrion	51.72	49.25
AT3G13160.1	Thale cress	mitochondrion	50.4	48.48
CDY43367	Canola	mitochondrion	49.6	47.72
CDY24208	Canola	mitochondrion	49.08	47.21
CDY66550	Canola	mitochondrion	37.2	47.16
CDX82550	Canola	mitochondrion	48.28	46.56
CDY26081	Canola	mitochondrion	48.55	46.46
Bra037096.1-P	Field mustard	mitochondrion	48.55	46.35
CDY08267	Canola	mitochondrion	48.55	46.35
Bra001492.1-P	Field mustard	mitochondrion	48.81	46.25
Solyc02g079830.1.1	Tomato	mitochondrion	40.11	38.0
GSMUA_Achr10P...	Banana	mitochondrion	37.99	35.91
Solyc02g079820.2.1	Tomato	cytosol, plastid	29.55	35.78
HORVU3Hr1G077400.1	Barley	cytosol	33.77	33.42
Os01t0785700-01	Rice	mitochondrion	35.88	31.34
Zm00001d012606_P001	Maize	mitochondrion	37.2	31.13
TraesCS3A01G324300.1	Wheat	plastid	35.36	31.02
EES01579	Sorghum	mitochondrion	35.09	31.0
EES01580	Sorghum	mitochondrion	35.88	30.98
TraesCS3A01G324200.1	Wheat	plastid	36.15	30.11
TraesCS3B01G353300.1	Wheat	plastid	32.45	29.43
Solyc02g085550.1.1	Tomato	plastid	18.73	28.98
TraesCS3D01G325200.1	Wheat	plastid	34.3	28.95
TraesCS3B01G361800.1	Wheat	plastid	33.51	28.93
TraesCS3A01G331700.1	Wheat	plastid	32.45	28.81
TraesCS3D01G317700.1	Wheat	plastid	35.62	28.6
TraesCS3A01G331600.1	Wheat	plastid	34.3	28.32
HORVU6Hr1G019320.1	Barley	plastid	33.51	27.37
TraesCS3A01G324500.1	Wheat	plastid	34.04	27.27
EER95222	Sorghum	mitochondrion	35.09	26.98
Solyc02g062910.1.1	Tomato	plastid	29.55	26.92
HORVU3Hr1G077440.2	Barley	mitochondrion	34.3	26.48
Solyc10g005280.1.1	Tomato	mitochondrion	26.91	25.37
TraesCS3B01G353500.1	Wheat	plastid	33.25	25.05
TraesCS3D01G317800.1	Wheat	plastid	33.25	25.05
Solyc05g012250.1.1	Tomato	mitochondrion	28.76	21.16
Solyc02g085650.2.1	Tomato	plastid	30.87	18.11

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4BFB8
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1052	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	EnsemblPlantsGene:Solyc03g031460.1	EnsemblPlants:Solyc03g031460.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002769278
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:4002740..4003879

Molecular Weight (calculated)

43187.4 Da

IEP (calculated)

9.765

GRAVY (calculated)

-0.353

Length

379 amino acids

Sequence
(BLAST)

001: MASFSRVIRR TFSTAEASVS PIRVISDDLY KERNLKRLVE KFKQYSDVTR FRTKTGIYES TVHRLASAKR YKWIEEILEH QKQYRPDISK ESFAARLVSL
101: YGKSGLFENA QKLFDEMPER NCKQSVKSVN ALLGACVNSQ KYEKLEGLFE ELLEKLKVKP DVVTYNIMIK GLCDKGELDK AAAFVNEIEK NGLKPDLVTF
201: NTILGVFYSN GKFDDGEKMW KLMVSKNVAP DIRSYNAKLV GLMNENKVSE AAKLVGELGS FKLKPDVFTY GALIRGFCKM SNLEEAKKWY KELVKSGSVP
301: NKVIFVSVIS SACEKGDFDW ALELCKEVFK RKCNVDAKLL QRVVDGLVKS SRIREAKEVV HLGKSNDYHL YKLNLPSVD

Best Arabidopsis Sequence Match ( AT1G55890.1 )
(BLAST)

001: MSSLSRVLRG TFNTCPIRRF SSAATVVSEP TAVTAAISPP QKSLTSLVNG ERNPKRIVEK FKKACESERF RTNIAVYDRT VRRLVAAKRL HYVEEILEEQ
101: KKYRDMSKEG FAARIISLYG KAGMFENAQK VFEEMPNRDC KRSVLSFNAL LSAYRLSKKF DVVEELFNEL PGKLSIKPDI VSYNTLIKAL CEKDSLPEAV
201: ALLDEIENKG LKPDIVTFNT LLLSSYLKGQ FELGEEIWAK MVEKNVAIDI RTYNARLLGL ANEAKSKELV NLFGELKASG LKPDVFSFNA MIRGSINEGK
301: MDEAEAWYKE IVKHGYRPDK ATFALLLPAM CKAGDFESAI ELFKETFSKR YLVGQTTLQQ LVDELVKGSK REEAEEIVKI AKTNDFLKLK LNLPSQEE

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g55890, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LG23]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.