Factsheet for Solyc03g112230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g041000.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Solyc07g041000.2.1	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046670	Potato	nucleus	81.37	81.55
Solyc06g071770.2.1	Tomato	nucleus	42.01	49.25
CDY08946	Canola	plastid	34.49	45.92
CDY24845	Canola	plastid	34.14	43.7
Bra010484.1-P	Field mustard	plastid	34.49	43.7
CDY03427	Canola	cytosol	35.42	43.4
Bra013825.1-P	Field mustard	plastid	34.84	42.88
CDY11029	Canola	plastid	33.33	42.54
CDY34302	Canola	plastid	34.38	42.31
CDX92649	Canola	cytosol	33.56	41.97
Bra019212.1-P	Field mustard	plastid	33.33	41.74
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	33.45	41.05
VIT_17s0000g09280.t01	Wine grape	nucleus	39.12	38.85
GSMUA_AchrUn_...	Banana	extracellular	6.37	37.16
KRH57136	Soybean	nucleus	37.27	36.67
GSMUA_Achr9P01840_001	Banana	nucleus	34.26	35.36
KRH03220	Soybean	nucleus	33.22	35.34
Os02t0593700-01	Rice	nucleus	34.26	35.03
Zm00001d017072_P002	Maize	nucleus	31.94	32.78
TraesCS6A01G208300.2	Wheat	nucleus	32.41	32.18
TraesCS6B01G236800.1	Wheat	cytosol	32.29	32.18
HORVU6Hr1G053250.1	Barley	cytosol	31.94	32.13
EES07083	Sorghum	nucleus	31.25	31.8
TraesCS6D01G191900.3	Wheat	nucleus	30.79	30.4
Zm00001d040272_P001	Maize	plastid	4.05	29.17
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	28.12	28.45
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	27.78	28.07
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	27.43	27.69
Os04t0476800-01	Rice	nucleus	27.89	27.36
Zm00001d003300_P001	Maize	nucleus	23.61	27.31
HORVU2Hr1G082590.15	Barley	nucleus	28.36	27.01
KXG26554	Sorghum	nucleus	27.2	26.26

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130	InterPro:IPR000270	InterPro:IPR000433
InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:K4BK77	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom
PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930
PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850
EnsemblPlantsGene:Solyc03g112230.2	EnsemblPlants:Solyc03g112230.2.1	InterPro:UBA-like_sf	UniParc:UPI00027674AF	InterPro:Znf_ZZ	SEG:seg

Description

No Description!

Coordinates

chr3:-:62694829..62699158

Molecular Weight (calculated)

94215.6 Da

IEP (calculated)

5.569

GRAVY (calculated)

-0.397

Length

864 amino acids

Sequence
(BLAST)

001: MAMESSIVIK VKYEETLRRF NACVINEKLD LDIGGLRDKI IRLFNFAHDA EITLTYIDED GDVVTLVDDA DLQDVVRQDL NPLRISARLN AAERSGRASA
101: RSSGNSTPLR SPRVQPPFLN LNSRVSDVLK YIPEPLRESV MKVCSDVTAS ASSSAPILAE LVDAMCELGL SHYQNQVSGP QPVKEAGSCS GISKGNAMSA
201: DGVMPNVKIG ESSAKKNGPL TAVHGEEPTL KTTEPKPNAS NAAVDASVKL VSKSETLEGD RTKAQSSSFE ASKAQKDKKF DVRSLDGRTI GYGYARNSPI
301: PPEKTSDEQP SKGHPVAKPV DLGGSASSSN VKQCNWDSLN ADSSGSLINI PYDGFTPSHV VHLNTVNVND SHNAGSSGSS MKMPYDGYIP AVRHLGPLIP
401: VNACPFSGMP TENNPIPPQN FSFEVPLKRS HNHSDGTGTI FHKGVRCDGC GVHPITGPRF ISKVKENYDL CSICFAEMGN DADYFRMDRP LTYPHPWSFK
501: GLHDLHGRLR PRPPTVPQVI RGFGLKAGRP KLDSRFIQDV NVLDGTIMAP LTQFTKIWRM KNNGNLVWPQ GTQLVWIGGD KLSDRFSVEL EMTTAGLAVD
601: QELDVAVDFA APEHPGRYIS YWRLASPSGQ KFGQRVWVLI QVDALLSLPK RGLVHEAFQG LNLNLPPASS GVSGADIINV NSEPHNVVPE PKSSNTMELV
701: DSVAEVNQNM EQEVKFPIND SLLVGFGDKS SSPSASGSTI SYPIIDLTKE PPSEDSSMQP SAVVAMQAPP LQDARGNFEV ETSLLQELEE MGFKQVDLNK
801: EILRKNEYDL EQSVDDLCGV AEWDPILEEL KDMGFCNKEM NKKLLKKNNG SIKRVVMDLI AGEQ

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.