Factsheet for Bra013825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009744.1-P
Bra011138.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Bra009744.1-P	AT4G29820.1	21798944
AT4G24690.1	Bra011138.1-P	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34302	Canola	plastid	97.01	97.01
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	74.36	74.15
Bra010484.1-P	Field mustard	plastid	70.8	72.87
Bra019212.1-P	Field mustard	plastid	71.51	72.75
PGSC0003DMT400019556	Potato	extracellular	8.26	59.18
PGSC0003DMT400069639	Potato	nucleus	38.46	36.73
Solyc06g071770.2.1	Tomato	nucleus	38.46	36.63
PGSC0003DMT400046670	Potato	nucleus	44.73	36.43
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	42.88	34.84
VIT_17s0000g09280.t01	Wine grape	nucleus	42.45	34.25
KRH57136	Soybean	nucleus	42.59	34.05
KRH03220	Soybean	nucleus	38.18	33.0
GSMUA_Achr9P01840_001	Banana	nucleus	38.75	32.5
Os02t0593700-01	Rice	nucleus	37.04	30.77
GSMUA_AchrUn_...	Banana	extracellular	6.41	30.41
EES07083	Sorghum	nucleus	36.47	30.15
Zm00001d017072_P002	Maize	nucleus	35.9	29.93
Zm00001d040272_P001	Maize	plastid	4.99	29.17
HORVU6Hr1G053250.1	Barley	cytosol	35.33	28.87
TraesCS6A01G208300.2	Wheat	nucleus	35.33	28.51
TraesCS6B01G236800.1	Wheat	cytosol	35.04	28.37
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	32.62	26.78
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	32.48	26.7
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	32.34	26.52
TraesCS6D01G191900.3	Wheat	nucleus	32.76	26.29
Os04t0476800-01	Rice	nucleus	31.91	25.43
Zm00001d003300_P001	Maize	nucleus	26.64	25.03
HORVU2Hr1G082590.15	Barley	nucleus	32.19	24.92
KXG26554	Sorghum	nucleus	31.34	24.58

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	EnsemblPlantsGene:Bra013825
EnsemblPlants:Bra013825.1	EnsemblPlants:Bra013825.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130
InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4DBG5	InterPro:NBR1
InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50135
PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934
SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA-like_sf	UniParc:UPI000254664C	InterPro:Znf_ZZ	SEG:seg

Description

AT4G24690 (E=3e-301) | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein

Coordinates

chrA01:+:7963405..7966358

Molecular Weight (calculated)

76038.0 Da

IEP (calculated)

5.341

GRAVY (calculated)

-0.324

Length

702 amino acids

Sequence
(BLAST)

001: MDSTTALVVK VSYGGVLRRF RVPFKANGQL DLDMASLRGK IAALFNLPLD AEFSLTYSDE DGDVVALVDD NDLFDVTNQR LKFLKITVQS NAGVPTNSVA
101: PESSGSSSAS VMPDSQNPVS KIQKGFNDVM MAVPNPMRDT ISKVYIDLTS KAASSSPVVG ELFDCINKLG KLSSPQESSP CSPVTKPGSS GPSLSREVPS
201: AGEKKDVSKK TQAGKKPVAD STSSGLGASF NECPFSGSTV IDSTPNPNPT NLNRHARRVC HSKKTNNGDY WNSLGVFHKG IRCDGCGVLP ITGPRFKSKV
301: KEDYDLCTIC FSVMGNEGDY TRMDKPVSAQ QLHPFRGLPT PFSNPWLGHV PRPHHGGLHF RCTRPKLDSR FVLDVNVLDG TVVAPSAPFT KIWKMRNNGS
401: LVWPHGTQIV WIGGDRFSSS LSVDLQIPVE GVPINSELDV KVEFVAPESP GRYISYWRMA SSNGAKFGQR VWVLIHVDAS LKGSVVNEFH GLNLNASPEE
501: NFAREFSGIN VNHVPAQPGS PSVNPGIVKG ADVEPEASSG SNIPMKDDLV VGEVEPVVPN TVVPNTLTPS SSSSSFNIIE FPNMPTTVEA LGGGSSSAKN
601: IPVPLQEDIE KNDVEITMLK ELEEMGFKEI DLNKEILRDN EYNLEQSVDA LCGVNEWDPI LEELQEMGFC DDLTNKRLLK KNNGSIKGVV MDLLTGEKEK
701: EA

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.