Factsheet for Zm00001d017072_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plasma membrane
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d050266_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Zm00001d050266_P001	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07083	Sorghum	nucleus	77.91	77.27
PGSC0003DMT400019556	Potato	extracellular	7.01	60.2
Os02t0593700-01	Rice	nucleus	56.18	55.98
Zm00001d040272_P001	Maize	plastid	7.72	54.17
HORVU6Hr1G053250.1	Barley	cytosol	54.04	52.97
TraesCS6A01G208300.2	Wheat	nucleus	54.04	52.3
TraesCS6B01G236800.1	Wheat	cytosol	53.68	52.13
TraesCS6D01G191900.3	Wheat	nucleus	51.31	49.37
GSMUA_AchrUn_...	Banana	extracellular	6.89	39.19
CDY08946	Canola	plastid	28.98	37.6
Bra013825.1-P	Field mustard	plastid	29.93	35.9
CDY11029	Canola	plastid	28.74	35.75
CDY24845	Canola	plastid	28.5	35.56
Bra010484.1-P	Field mustard	plastid	28.74	35.48
CDY34302	Canola	plastid	29.45	35.33
Bra019212.1-P	Field mustard	plastid	28.74	35.07
CDY03427	Canola	cytosol	29.33	35.04
CDX92649	Canola	cytosol	28.62	34.88
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	28.86	34.52
PGSC0003DMT400069639	Potato	nucleus	29.57	33.88
Zm00001d003300_P001	Maize	nucleus	29.93	33.73
Solyc06g071770.2.1	Tomato	nucleus	29.22	33.38
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	32.78	31.94
PGSC0003DMT400046670	Potato	nucleus	31.59	30.86
VIT_17s0000g09280.t01	Wine grape	nucleus	30.88	29.89
KRH57136	Soybean	nucleus	29.93	28.7
KRH03220	Soybean	nucleus	26.25	27.22

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100275089	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90
ProteinID:AQK72238.1	EMBL:BT066423	UniProt:C0PDQ4	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016236	GO:GO:0043130	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:IPR015940
InterPro:Ig-like_fold	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158
PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3	SMART:SM00291
SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI000195C920	EnsemblPlantsGene:Zm00001d017072	EnsemblPlants:Zm00001d017072_P002	EnsemblPlants:Zm00001d017072_T002	InterPro:Znf_ZZ	SEG:seg

Description

next to brca1aProtein NBR1 homolog

Coordinates

chr5:-:184389616..184394455

Molecular Weight (calculated)

92625.8 Da

IEP (calculated)

6.019

GRAVY (calculated)

-0.450

Length

842 amino acids

Sequence
(BLAST)

001: MSDWSSPAAP TFFPFGPQAE GWDVTFKVKY GDTLKRFYGC ANGSHFDMNL SALRARIDTA FKFGPDVDFV LTYTDEDGDI VMLDDDDDLR DAALRQRLNP
101: LRITVQLKKN QPTEKKDTSA PVKSAAQDPL SQLMSAIEGL KPVQEDSLAH IKSAIGEAIK SIPEPIPDAL AKLSHEILDA APPPLAELMK PFAQLMAPNN
201: NGNGPSDVHA EGSSSSSSAQ VPAEAKNEPK VRPSLGLKTV LKEAAGPVPN AGASQVQQPL MYPSVEEMLF PCNSVDKSVC KGKIDAQSKG KSVTSSGIQP
301: APHSLRTHAP PPPHPCISEW SRAQRSQHRQ LKFEDNAKAT NDSRWRIPMY KMPYAPPPPA VPPPGYVPSP HFPYPGRLLS SGHPYGDLAG NMENSAPHSL
401: HRWIQCDGCG AQPIVGPRYK SNVKEDYDLC DSCFQRMGNE MEYTKIDKPI LPHRFLRDPH VYRKVHHPRV LMKSRREKLE SRFILDVTVL DGTLMTPSTP
501: FTKIWRMHNN GSVVWPRGTQ LVWVGGDQFA LQTSVPLEIP VDGFPVDKEI DVPVDFVAPT RPGRYISYWR LASPSGQKFG QRVWVHIQVE DPSFVNDNNR
601: NAAINLNLPP ESYSSNTTNL IDVNIEPADS ALSAHAKRTK EFHFCSTDFP EPSKSVPFTL ATTSLSAAAP TNQTGDVPMS STPAAACLPS VNVPMHEVVT
701: THTPSPITPV LPTTIHFSAP VSAPAIAPEL ASGAVGVPPP VSAVVPELSE LDVHNEEKLL RELEEMGFRQ VDLNKEILRQ NNYNLEQSVD DLCGVNEWDP
801: LLAELEEMGF DDTEMNKELL AKNEGSIKRA VMELIAREKK DK

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.