Factsheet for Zm00001d003300_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d050266_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Zm00001d050266_P001	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26554	Sorghum	nucleus	59.71	49.83
Zm00001d040272_P001	Maize	plastid	6.16	38.33
GSMUA_AchrUn_...	Banana	extracellular	7.5	37.84
Os04t0476800-01	Rice	nucleus	38.55	32.69
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	36.41	31.85
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	35.34	30.88
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	35.34	30.84
HORVU2Hr1G082590.15	Barley	nucleus	36.81	30.32
CDY08946	Canola	plastid	26.24	30.2
Zm00001d017072_P002	Maize	nucleus	33.73	29.93
Bra010484.1-P	Field mustard	plastid	26.77	29.33
CDY24845	Canola	plastid	25.97	28.74
CDY11029	Canola	plastid	25.17	27.77
PGSC0003DMT400019556	Potato	extracellular	3.61	27.55
Bra019212.1-P	Field mustard	plastid	25.3	27.39
CDY03427	Canola	cytosol	25.84	27.38
CDX92649	Canola	cytosol	25.17	27.21
CDY34302	Canola	plastid	25.44	27.07
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	25.17	26.7
Bra013825.1-P	Field mustard	plastid	25.03	26.64
Solyc06g071770.2.1	Tomato	nucleus	26.24	26.59
PGSC0003DMT400069639	Potato	nucleus	25.97	26.39
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	27.31	23.61
PGSC0003DMT400046670	Potato	nucleus	26.37	22.85
VIT_17s0000g09280.t01	Wine grape	nucleus	26.51	22.76
KRH03220	Soybean	nucleus	23.96	22.04
KRH57136	Soybean	nucleus	24.63	20.96

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	UniProt:A0A1D6E8G4
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008270	GO:GO:0046872	InterPro:IPR000270
InterPro:IPR000433	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:N_BRCA1_central	ProteinID:ONM16710.1	InterPro:PB1_dom
PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	ScanProsite:PS01357	PFscan:PS50135	PFscan:PS51745
PANTHER:PTHR20930	PANTHER:PTHR20930:SF3	SMART:SM00291	SMART:SM00666	SUPFAM:SSF54277	SUPFAM:SSF57850
UniParc:UPI000845890D	EnsemblPlantsGene:Zm00001d003300	EnsemblPlants:Zm00001d003300_P001	EnsemblPlants:Zm00001d003300_T001	InterPro:Znf_ZZ	SEG:seg

Description

next to brca1bProtein NBR1 homolog

Coordinates

chr2:+:39371689..39384197

Molecular Weight (calculated)

82227.7 Da

IEP (calculated)

5.064

GRAVY (calculated)

-0.374

Length

747 amino acids

Sequence
(BLAST)

001: MDLRYSHAWP RINAWDLVVK VKYGDTLKRF NVSVNGSHLE HDLPALRLKI SIAFKFNSDT EYTLTYTDDD GDDVMLDDDN ELRDAAVNQK LNPLRISVQL
101: KGGNVETART EQHTTNLKST RSTSLEDELA QVKSAIDEAL QFVPEQIPAV LAKLSHDLHS RAALSAPTLA ELLYRIVELV VRSSNIQPSG GSGVGSQKIG
201: NSKAKLETTT MSVSASNSPD MQNPETPENG LKSVLLENPA AKKDQVSLCP SVEDSLVFTS LGGRKSEPKR NADNETEIKL DARSKEGKSF GSSYRGLDAN
301: FGSIAQCEHH RWVQCYGCGV THIVGSRYKS DLEDEYDLCD DCFSHIDNGA EYTRLDSSAS RCAPVAKTNS LLKDVTVPDG TTMAPSHPFT KIWRVRNNGS
401: TRWPYGTKLV WDGGHLAPPS TVRSPISVNG MINPCEETDV AVDFLAPARP GRYISYWRLA LPSGQRFGQR IWVYIKVVTL PLPAFGLCHI DAYIYLVEQP
501: IQSSGGKQAA VNQAKLKRLT LDIDSNIFYS EHFYGCPGIP EANSKPFTPY IETNNVFSES FPRCPGSFQE TMKLEESRPA RGDMLSVPTT VAPVQIPATD
601: VSAESSLDSI PGGVTASEAF ALPNPLPMLP VSSSAPVVDD YVHMCAPAAS IAPVPATPLP EQVVNHMEGK LMGELEGLGF MQADLNKHIL RQNNYDLDQS
701: VAHLRDYDAW DALEFFKLVR FGEGGQADPE DEQTHWQQTI LYFSDPI

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.