Factsheet for Os04t0476800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0398800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Os08t0398800-02	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	41.66	42.97
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	41.09	42.29
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	40.86	42.11
KXG26554	Sorghum	nucleus	41.66	41.01
HORVU2Hr1G082590.15	Barley	nucleus	42.11	40.9
Os02t0593700-01	Rice	nucleus	39.05	40.71
Zm00001d003300_P001	Maize	nucleus	32.69	38.55
GSMUA_AchrUn_...	Banana	extracellular	6.36	37.84
CDY08946	Canola	plastid	25.31	34.36
Bra010484.1-P	Field mustard	plastid	25.77	33.28
CDY11029	Canola	plastid	25.31	32.94
Bra019212.1-P	Field mustard	plastid	25.65	32.75
CDX92649	Canola	cytosol	25.65	32.71
PGSC0003DMT400019556	Potato	extracellular	3.63	32.65
CDY24845	Canola	plastid	24.74	32.3
Bra013825.1-P	Field mustard	plastid	25.43	31.91
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	25.43	31.82
CDY03427	Canola	cytosol	25.43	31.77
CDY34302	Canola	plastid	25.2	31.62
PGSC0003DMT400069639	Potato	nucleus	26.11	31.29
Solyc06g071770.2.1	Tomato	nucleus	26.11	31.21
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	27.36	27.89
PGSC0003DMT400046670	Potato	nucleus	26.79	27.38
KRH03220	Soybean	nucleus	24.97	27.09
VIT_17s0000g09280.t01	Wine grape	nucleus	26.22	26.55
KRH57136	Soybean	nucleus	25.09	25.17

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	EntrezGene:4336158
ProteinID:BAF14997.1	ProteinID:BAS89698.1	ProteinID:CAE05860.1	ProteinID:EAZ31087.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008270	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:N_BRCA1_central	EnsemblPlantsGene:Os04g0476800	EnsemblPlants:Os04t0476800-01	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569
PFAM:PF16158	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3	UniProt:Q7XK43
SMART:SM00291	SMART:SM00666	SUPFAM:SSF54277	SUPFAM:SSF57850	UniParc:UPI00001B1CBD	RefSeq:XP_015634985.1
InterPro:Znf_ZZ	SEG:seg	:	:	:	:

Description

Similar to TA5 protein (Fragment). (Os04t0476800-01)

Coordinates

chr4:-:23867557..23872076

Molecular Weight (calculated)

94421.3 Da

IEP (calculated)

6.541

GRAVY (calculated)

-0.334

Length

881 amino acids

Sequence
(BLAST)

001: MSRRRDAAPT AREGERDLVV KVKFGGTLKR FTAFVNGPHF DLNLAALRSK IASAFKFNPD TEFVLTYTDE DGDVVILDDD SDLCDAAISQ RLNPLRINVE
101: LKSSSDGVHQ TKQQVLDSIS VMSTALEDQL AQVKLAIDEA LKFVPEQVPT VLAKISHDLR SKAASSAPSL ADLLDRLAKL MAPKSKMQSS SGSADGSSGS
201: SSGRGQTLGS LNIKNDTELM AVSASNPLDM HNSGSTKSLG LKGVLLDDIK AQAEHVSGYP YYVDTLSGWV KVDNKGSTNA QSKGKSVTSS AVPQVTSIGH
301: GAPTVHSAPA SDCGEGLRSD LFWTQLGLSS ESFGPNGQIG GDLNSTCPPP PLFPRYPLQS LRADKSSIKG GCSYPPCICK SSTSKPENLS HYPVQSLQAD
401: RSLKGGHYFP PCTCKSNTSK PDNLSPVGLY GPYSEGSSCN RCPYRDLSDK HESMAQHTLH RWIQCDGCGV TPIAGSRYKS NIKDDYDLCN TCFSRMGNVN
501: EYTRIDRPSF GSRRCRDLNQ NQMLFPHLRQ LHDCRFIKDV TVPDGTVMAP STPFTKIWRI HNNGSSMWPY GTCLTWVGGH LFARNSSVKL GISVDGFPID
601: QEIDVGVDFV TPAKPGGYVS YWRLASPTGQ MFGQRVWVFI QVEHPVKTSS NKQSAAINLN MPPEGSNTEW KHSVDANIQS ADIVGKYSGS TITDPLAHAL
701: YHEATKPMEP ELVSSAVPSV PRAFESVLVP ATDLLTSSAG AEKASKPAAT PGPAPQAVPL PKPVSIPASG PAPAPVSATT AAPVGAAAAP ISEPTAPAAA
801: IGMPSATARA ASCLPTEPSS DHISAVEDNM LRELGQMGFG QVDLNKEIIR RNEYNLEQSI DELCGILEWD ALHDELHELG I

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.