CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68589
CDX85073
CDX88086
CDX88087
CDY43528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	CDX68589	AT4G29820.1	21798944
AT4G24690.1	CDX85073	AT4G29820.1	21798944
AT4G24690.1	CDX88086	AT4G29820.1	21798944
AT4G24690.1	CDX88087	AT4G29820.1	21798944
AT4G24690.1	CDY43528	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34302	Canola	plastid	91.91	92.31
CDY11029	Canola	plastid	72.62	75.63
CDY24845	Canola	plastid	71.77	74.96
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	74.47	74.57
CDY08946	Canola	plastid	68.37	74.27
CDX92649	Canola	cytosol	71.63	73.08
PGSC0003DMT400019556	Potato	extracellular	8.23	59.18
Solyc06g071770.2.1	Tomato	nucleus	38.72	37.04
PGSC0003DMT400069639	Potato	nucleus	38.44	36.87
PGSC0003DMT400046670	Potato	nucleus	44.26	36.19
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	43.4	35.42
KRH57136	Soybean	nucleus	43.4	34.85
VIT_17s0000g09280.t01	Wine grape	nucleus	42.41	34.37
KRH03220	Soybean	nucleus	39.15	33.99
GSMUA_Achr9P01840_001	Banana	nucleus	38.44	32.38
Os02t0593700-01	Rice	nucleus	36.74	30.65
GSMUA_AchrUn_...	Banana	extracellular	6.38	30.41
EES07083	Sorghum	nucleus	35.74	29.68
Zm00001d017072_P002	Maize	nucleus	35.04	29.33
Zm00001d040272_P001	Maize	plastid	4.96	29.17
HORVU6Hr1G053250.1	Barley	cytosol	35.46	29.1
TraesCS6B01G236800.1	Wheat	cytosol	35.46	28.84
TraesCS6A01G208300.2	Wheat	nucleus	35.46	28.74
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	33.05	27.25
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	32.91	27.17
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	32.62	26.87
TraesCS6D01G191900.3	Wheat	nucleus	33.05	26.63
Zm00001d003300_P001	Maize	nucleus	27.38	25.84
Os04t0476800-01	Rice	nucleus	31.77	25.43
HORVU2Hr1G082590.15	Barley	nucleus	32.48	25.25
KXG26554	Sorghum	nucleus	31.77	25.03

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:A0A078EQS3
EnsemblPlants:CDY03427	ProteinID:CDY03427	ProteinID:CDY03427.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016236
GO:GO:0043130	EnsemblPlantsGene:GSBRNA2T00116077001	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:Ig-like_fold
InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158
PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666
SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA-like_sf	UniParc:UPI0004EE22DA	InterPro:Znf_ZZ
SEG:seg	:	:	:	:	:

Description

BnaC01g16550D

Coordinates

chrLK031943:-:387784..391236

Molecular Weight (calculated)

76345.3 Da

IEP (calculated)

5.446

GRAVY (calculated)

-0.333

Length

705 amino acids

Sequence
(BLAST)

001: MDSTTALVVK VSYGGVLRRF RVPFKANGQL DLDMAALRGK IAALFNLPLD AEFSLTYSDE DGDVVALVDD NDLSDVTNQR LKFLKITVQS NGGVPVNSFA
101: SDSSGSSSAS VMPDSQNPVS KIQKGFNDVM MAVPNPMRDT ISKVYIDLTS KAASSSPVVG ELFDCINKLG KLSSPQESSP CSPVAKPGSS GPSLSREVPS
201: TGEKKDASKK TQAGKKPANL KEPVADSTSC GLGASFNECP FSGSTVIDST PNPTSHNKHA RRVCHSKKTN NGDYWASLGV FHKGIRCDGC GVLPITGPRF
301: KSKVKEDYDL CTICFSVMGN EGDYTRMDKP VSAQQLHPFR GLPTPFSNPW LGHVPRPHHG GLHFRCTRPK LDSRFVLDVN VLDGTVVAPS APFTKIWKMR
401: NNGSLVWPHG TQIVWIGGDR FSSSLSVDLQ IPVEGVPINS ELDVKVEFVA PESPGRYISY WRMASSNGLK FGQRVWVLIH VDASLKSCVE NEFHGLNLNA
501: SPEENFAREF SGINVNHVPA QPCSPSVNPG IVKGADVEPE ASSGSNIPMK DDLFVGEVEP VVPNTLTPSS SSSSSSSSFN IIEFPNKPTT VEALGGGSSS
601: AKNIPIPLQE DIEKNDVEIT MLKELEEMGF KEIDLNKEIL RDNEYNLEQS VDALCGVSEW DPILEELQEM GFCDDVTNKR LLKKNNGSIK GVVMDLLTGE
701: KEKEA

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.