Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
HORVU7Hr1G078670.4 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT4G24690.1 | HORVU7Hr1G078670.4 | AT4G29820.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6A01G208300.2 | Wheat | nucleus | 92.2 | 91.03 |
TraesCS6B01G236800.1 | Wheat | cytosol | 84.05 | 83.28 |
TraesCS6D01G191900.3 | Wheat | nucleus | 81.14 | 79.66 |
Os02t0593700-01 | Rice | nucleus | 64.38 | 65.44 |
PGSC0003DMT400019556 | Potato | extracellular | 6.87 | 60.2 |
EES07083 | Sorghum | nucleus | 53.9 | 54.53 |
Zm00001d017072_P002 | Maize | nucleus | 52.97 | 54.04 |
Zm00001d040272_P001 | Maize | plastid | 6.05 | 43.33 |
GSMUA_AchrUn_... | Banana | extracellular | 6.87 | 39.86 |
CDY08946 | Canola | plastid | 29.92 | 39.6 |
Bra010484.1-P | Field mustard | plastid | 29.57 | 37.24 |
CDY11029 | Canola | plastid | 28.87 | 36.63 |
CDY24845 | Canola | plastid | 28.75 | 36.59 |
CDX92649 | Canola | cytosol | 29.22 | 36.32 |
Bra019212.1-P | Field mustard | plastid | 28.99 | 36.09 |
CDY03427 | Canola | cytosol | 29.1 | 35.46 |
CDY34302 | Canola | plastid | 28.87 | 35.33 |
Bra013825.1-P | Field mustard | plastid | 28.87 | 35.33 |
HORVU2Hr1G082590.15 | Barley | nucleus | 36.9 | 34.95 |
AT4G24690.1 | Thale cress | cytosol, nucleus, plastid | 28.29 | 34.52 |
PGSC0003DMT400069639 | Potato | nucleus | 29.1 | 34.01 |
Solyc06g071770.2.1 | Tomato | nucleus | 28.75 | 33.51 |
Solyc03g112230.2.1 | Tomato | cytosol, nucleus, plastid | 32.13 | 31.94 |
PGSC0003DMT400046670 | Potato | nucleus | 31.66 | 31.55 |
KRH57136 | Soybean | nucleus | 30.38 | 29.73 |
VIT_17s0000g09280.t01 | Wine grape | nucleus | 29.22 | 28.85 |
KRH03220 | Soybean | nucleus | 27.12 | 28.69 |
Protein Annotations
Gene3D:1.10.8.10 | MapMan:19.3.4.2 | Gene3D:2.60.40.10 | Gene3D:3.10.20.90 | Gene3D:3.30.60.90 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008270 | EnsemblPlantsGene:HORVU6Hr1G053250 | EnsemblPlants:HORVU6Hr1G053250.1 | InterPro:IPR000270 |
InterPro:IPR000433 | InterPro:IPR013783 | InterPro:IPR015940 | InterPro:Ig-like_fold | UniProt:M0YZ84 | InterPro:N_BRCA1_central |
InterPro:PB1_dom | PFAM:PF00564 | PFAM:PF00569 | PFAM:PF16158 | PFscan:PS50030 | PFscan:PS50135 |
PFscan:PS51745 | PANTHER:PTHR20930 | PANTHER:PTHR20930:SF3 | SMART:SM00291 | SMART:SM00666 | SUPFAM:SSF46934 |
SUPFAM:SSF54277 | SUPFAM:SSF57850 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI00029697F4 | InterPro:Znf_ZZ |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:330172432..330177985
Molecular Weight (calculated)
94136.9 Da
IEP (calculated)
5.251
GRAVY (calculated)
-0.468
Length
859 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGLSAPPFD GLASGPDPWD VVVKVKYGDT LKRFNGYVNG THFTLNLSAL RSKIASAFKF GPDADFILTY TDEDGDVVML DDDEDLHDAA IHQKLNPLRI
101: NVQVKNSHAD ASHINRQDSR PKPVRDTTQD PLAQIKSVID EALKPISEPL RSTAREDPLA HLKSALDEAM KSIHEPVPES LAKLSREVLD AAPPQLTDLI
201: KPFVNLITST NSSQSAGHAE SSPVSSGVQQ AQVDLKANDQ PKVDSSLGSS ETRGLKSVLA EVPAAVITEA SQGQQGSLYP SVEDLLFTSN SGGNSSGCKG
301: MSNAESKGKS VMPSAEPLSR STVPNFRPSH PNASGYEWYQ PRRSTDGWSQ PKSIWQPEAN VKPASDPGWR VPMYKAPHPS PPVPHAPLGY GHSPQFPYPG
401: RLLSAGRLHG NLSNNSERSP RISHRWIQCD GCGVQPIVGP RYKSNVKEDY DLCDTCFRRM GSEVEYTRID KPILPHKLSR DLNLCRKIHS RVSMKSKREK
501: LESRFILDVT VLDGTLMSPS SPFTKIWRMH NNGSIMWPLG TQLIWVGGDQ FALQTSVPLE IPLNGFPVDQ EMDVAVDFVA PARPGRYISY WRLASPSGQK
601: FGQRVWVHIQ VEDPSFVSDN KTAAVNLNQP QESNITNTSS LPQESDITNA SNLIDVNVEP ANQVLDEHVN DTRIELLEPL IYREAAEPKK SPSASAAAPL
701: YPKVDVPSSS ENAAGFVPSV NVLAPEVIPE PSATTPAEVP TSLLTSIPVD LTVAATAPVD VASALLDIDR LTEEKLLQEL EEMGFKQVDL NKEILRQNKY
801: NLEQSVDDLC GVNEWDPLLA ELSEMGFDDR ETNKELLAKN GGSIKRAVMD LIAREKKDK
101: NVQVKNSHAD ASHINRQDSR PKPVRDTTQD PLAQIKSVID EALKPISEPL RSTAREDPLA HLKSALDEAM KSIHEPVPES LAKLSREVLD AAPPQLTDLI
201: KPFVNLITST NSSQSAGHAE SSPVSSGVQQ AQVDLKANDQ PKVDSSLGSS ETRGLKSVLA EVPAAVITEA SQGQQGSLYP SVEDLLFTSN SGGNSSGCKG
301: MSNAESKGKS VMPSAEPLSR STVPNFRPSH PNASGYEWYQ PRRSTDGWSQ PKSIWQPEAN VKPASDPGWR VPMYKAPHPS PPVPHAPLGY GHSPQFPYPG
401: RLLSAGRLHG NLSNNSERSP RISHRWIQCD GCGVQPIVGP RYKSNVKEDY DLCDTCFRRM GSEVEYTRID KPILPHKLSR DLNLCRKIHS RVSMKSKREK
501: LESRFILDVT VLDGTLMSPS SPFTKIWRMH NNGSIMWPLG TQLIWVGGDQ FALQTSVPLE IPLNGFPVDQ EMDVAVDFVA PARPGRYISY WRLASPSGQK
601: FGQRVWVHIQ VEDPSFVSDN KTAAVNLNQP QESNITNTSS LPQESDITNA SNLIDVNVEP ANQVLDEHVN DTRIELLEPL IYREAAEPKK SPSASAAAPL
701: YPKVDVPSSS ENAAGFVPSV NVLAPEVIPE PSATTPAEVP TSLLTSIPVD LTVAATAPVD VASALLDIDR LTEEKLLQEL EEMGFKQVDL NKEILRQNKY
801: NLEQSVDDLC GVNEWDPLLA ELSEMGFDDR ETNKELLAKN GGSIKRAVMD LIAREKKDK
001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
Arabidopsis Description
NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.