Skip to main content
crop-pal logo
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
  • cytosol 2
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU7Hr1G078670.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G24690.1 HORVU7Hr1G078670.4 AT4G29820.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6A01G208300.2 Wheat nucleus 92.2 91.03
TraesCS6B01G236800.1 Wheat cytosol 84.05 83.28
TraesCS6D01G191900.3 Wheat nucleus 81.14 79.66
Os02t0593700-01 Rice nucleus 64.38 65.44
PGSC0003DMT400019556 Potato extracellular 6.87 60.2
EES07083 Sorghum nucleus 53.9 54.53
Zm00001d017072_P002 Maize nucleus 52.97 54.04
Zm00001d040272_P001 Maize plastid 6.05 43.33
GSMUA_AchrUn_... Banana extracellular 6.87 39.86
CDY08946 Canola plastid 29.92 39.6
Bra010484.1-P Field mustard plastid 29.57 37.24
CDY11029 Canola plastid 28.87 36.63
CDY24845 Canola plastid 28.75 36.59
CDX92649 Canola cytosol 29.22 36.32
Bra019212.1-P Field mustard plastid 28.99 36.09
CDY03427 Canola cytosol 29.1 35.46
CDY34302 Canola plastid 28.87 35.33
Bra013825.1-P Field mustard plastid 28.87 35.33
HORVU2Hr1G082590.15 Barley nucleus 36.9 34.95
AT4G24690.1 Thale cress cytosol, nucleus, plastid 28.29 34.52
PGSC0003DMT400069639 Potato nucleus 29.1 34.01
Solyc06g071770.2.1 Tomato nucleus 28.75 33.51
Solyc03g112230.2.1 Tomato cytosol, nucleus, plastid 32.13 31.94
PGSC0003DMT400046670 Potato nucleus 31.66 31.55
KRH57136 Soybean nucleus 30.38 29.73
VIT_17s0000g09280.t01 Wine grape nucleus 29.22 28.85
KRH03220 Soybean nucleus 27.12 28.69
Protein Annotations
Gene3D:1.10.8.10MapMan:19.3.4.2Gene3D:2.60.40.10Gene3D:3.10.20.90Gene3D:3.30.60.90GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0008270EnsemblPlantsGene:HORVU6Hr1G053250EnsemblPlants:HORVU6Hr1G053250.1InterPro:IPR000270
InterPro:IPR000433InterPro:IPR013783InterPro:IPR015940InterPro:Ig-like_foldUniProt:M0YZ84InterPro:N_BRCA1_central
InterPro:PB1_domPFAM:PF00564PFAM:PF00569PFAM:PF16158PFscan:PS50030PFscan:PS50135
PFscan:PS51745PANTHER:PTHR20930PANTHER:PTHR20930:SF3SMART:SM00291SMART:SM00666SUPFAM:SSF46934
SUPFAM:SSF54277SUPFAM:SSF57850InterPro:UBAInterPro:UBA-like_sfUniParc:UPI00029697F4InterPro:Znf_ZZ
SEG:seg:::::
Description
No Description!
Coordinates
chrchr6H:-:330172432..330177985
Molecular Weight (calculated)
94136.9 Da
IEP (calculated)
5.251
GRAVY (calculated)
-0.468
Length
859 amino acids
Sequence
(BLAST)
001: MSGLSAPPFD GLASGPDPWD VVVKVKYGDT LKRFNGYVNG THFTLNLSAL RSKIASAFKF GPDADFILTY TDEDGDVVML DDDEDLHDAA IHQKLNPLRI
101: NVQVKNSHAD ASHINRQDSR PKPVRDTTQD PLAQIKSVID EALKPISEPL RSTAREDPLA HLKSALDEAM KSIHEPVPES LAKLSREVLD AAPPQLTDLI
201: KPFVNLITST NSSQSAGHAE SSPVSSGVQQ AQVDLKANDQ PKVDSSLGSS ETRGLKSVLA EVPAAVITEA SQGQQGSLYP SVEDLLFTSN SGGNSSGCKG
301: MSNAESKGKS VMPSAEPLSR STVPNFRPSH PNASGYEWYQ PRRSTDGWSQ PKSIWQPEAN VKPASDPGWR VPMYKAPHPS PPVPHAPLGY GHSPQFPYPG
401: RLLSAGRLHG NLSNNSERSP RISHRWIQCD GCGVQPIVGP RYKSNVKEDY DLCDTCFRRM GSEVEYTRID KPILPHKLSR DLNLCRKIHS RVSMKSKREK
501: LESRFILDVT VLDGTLMSPS SPFTKIWRMH NNGSIMWPLG TQLIWVGGDQ FALQTSVPLE IPLNGFPVDQ EMDVAVDFVA PARPGRYISY WRLASPSGQK
601: FGQRVWVHIQ VEDPSFVSDN KTAAVNLNQP QESNITNTSS LPQESDITNA SNLIDVNVEP ANQVLDEHVN DTRIELLEPL IYREAAEPKK SPSASAAAPL
701: YPKVDVPSSS ENAAGFVPSV NVLAPEVIPE PSATTPAEVP TSLLTSIPVD LTVAATAPVD VASALLDIDR LTEEKLLQEL EEMGFKQVDL NKEILRQNKY
801: NLEQSVDDLC GVNEWDPLLA ELSEMGFDDR ETNKELLAKN GGSIKRAVMD LIAREKKDK
Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)
001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
Arabidopsis Description
NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.