Factsheet for TraesCS6D01G191900.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G328600.1
TraesCS7B01G229300.1
TraesCS7D01G325500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	TraesCS7A01G328600.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7B01G229300.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7D01G325500.1	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G236800.1	Wheat	cytosol	91.2	92.04
TraesCS6A01G208300.2	Wheat	nucleus	84.34	84.83
HORVU6Hr1G053250.1	Barley	cytosol	79.66	81.14
Os02t0593700-01	Rice	nucleus	61.37	63.55
EES07083	Sorghum	nucleus	51.31	52.89
Zm00001d017072_P002	Maize	nucleus	49.37	51.31
Zm00001d040272_P001	Maize	plastid	6.06	44.17
PGSC0003DMT400019556	Potato	extracellular	4.69	41.84
GSMUA_AchrUn_...	Banana	extracellular	6.74	39.86
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	37.03	37.89
CDY08946	Canola	plastid	27.43	36.98
Bra010484.1-P	Field mustard	plastid	27.2	34.9
CDY11029	Canola	plastid	26.86	34.71
Bra019212.1-P	Field mustard	plastid	27.2	34.49
CDY24845	Canola	plastid	26.51	34.37
CDX92649	Canola	cytosol	26.97	34.15
CDY03427	Canola	cytosol	26.63	33.05
Bra013825.1-P	Field mustard	plastid	26.29	32.76
CDY34302	Canola	plastid	26.17	32.62
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	26.17	32.53
PGSC0003DMT400069639	Potato	nucleus	26.97	32.11
Solyc06g071770.2.1	Tomato	nucleus	26.63	31.61
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	30.4	30.79
PGSC0003DMT400046670	Potato	nucleus	29.71	30.16
KRH03220	Soybean	nucleus	26.63	28.69
KRH57136	Soybean	nucleus	28.0	27.9
VIT_17s0000g09280.t01	Wine grape	nucleus	26.86	27.01

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008270	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:IPR015940	InterPro:Ig-like_fold	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569
PFAM:PF16158	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3
SMART:SM00291	SMART:SM00666	SUPFAM:SSF54277	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6D01G191900	EnsemblPlants:TraesCS6D01G191900.3
InterPro:UBA	InterPro:Znf_ZZ	TIGR:cd06398	TIGR:cd14947	SEG:seg	:

Description

No Description!

Coordinates

chr6D:-:264666541..264671757

Molecular Weight (calculated)

95685.5 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.472

Length

875 amino acids

Sequence
(BLAST)

001: MSGLSAPPFD GLASGPDPWD VVVKVKYGDT LKRFNGYVNG THFTLNLSAL RSKIANAFKF APDADFFLTY TDEDGDVVML DDDEDLHDAA IHQKLNPLRI
101: NVQLKNSHAG ASHINRQDSS PKPLGATTQD PLAQIKSVID EALKPISEPL RSTAREDPLA HLKSALDEAM KSIHEPVPES LAKLSREVLD AAPPQLTDLI
201: KPFVNLITST NSSQSAGRAD RSPVSSSGVQ QAQVDLKADG QPKVEASLGS RPLNERSPVS SETGGLKSVL VEVPAVVITE ASQGQGSLYP SVEDLLYTSN
301: SGGNSSGSKD MSDAQSKGKS VMPSAEQPAR STVPSFRPSH PNASGNEWFQ PRRSVDGWSQ PRSIWQPETN VKPASDPGWR VPMYKAPHPS PPAPHAPLGY
401: GHSPQFPYPG HLLSAGRLYG NLGNNSERSP RISHRWIQCD GCGVQPIVGP RYKSNVKEDY DLCDTCFRRM GSEVEYTRID KPILPHKLSR DPNLCRKIHS
501: RASMKSKREK LESRFILDVT VLDGTLMSPS SPFTKIWRMH NNGSIMWPLG TQLIWVGGDQ FALQTSVPLE IPLNGFPVDQ EMDVAVDFVA PARPGRYISY
601: WRLASPSGQK FGQRVWVHIQ VEDPSFVSDN KTAAVNLNQP QESNITNTSS LPQESNITNT SSLPQESNMT NTSNLIDVNM EPANQVLDEH VNGTRMELLE
701: PLIYHEAAEP KKSPSAFSAA PPYPMVDVPS SSENAAAFVP SVNVLAPEVI PRPAVTTPAD VPTSSLTSIP VDLPVAATTP VDVASAPLDI DSLTEEKLLQ
801: ELEEMGFKQV DLNKEILRQN KYNLEQSVDD LCGVNEWDPL LAELNEMCCS SSRDLMTGRR TRSFLPRMEE ASNEL

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.