Factsheet for TraesCS2D01G335900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

mitochondrion 3
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G328600.1
TraesCS7B01G229300.1
TraesCS7D01G325500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	TraesCS7A01G328600.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7B01G229300.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7D01G325500.1	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	85.61	85.51
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	85.03	85.13
HORVU2Hr1G082590.15	Barley	nucleus	79.18	74.64
Os04t0476800-01	Rice	nucleus	42.11	40.86
GSMUA_AchrUn_...	Banana	extracellular	6.67	38.51
TraesCS6D01G191900.3	Wheat	nucleus	37.89	37.03
PGSC0003DMT400019556	Potato	extracellular	4.21	36.73
KXG26554	Sorghum	nucleus	38.25	36.54
CDY08946	Canola	plastid	27.37	36.06
Zm00001d003300_P001	Maize	nucleus	30.88	35.34
CDY11029	Canola	plastid	27.25	34.42
Bra010484.1-P	Field mustard	plastid	26.9	33.72
Bra019212.1-P	Field mustard	plastid	26.9	33.33
CDX92649	Canola	cytosol	26.78	33.14
CDY03427	Canola	cytosol	27.25	33.05
CDY34302	Canola	plastid	27.13	33.05
Bra013825.1-P	Field mustard	plastid	26.78	32.62
CDY24845	Canola	plastid	25.73	32.59
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	26.55	32.24
PGSC0003DMT400069639	Potato	nucleus	26.55	30.88
Solyc06g071770.2.1	Tomato	nucleus	26.55	30.8
KRH03220	Soybean	nucleus	26.9	28.33
PGSC0003DMT400046670	Potato	nucleus	28.07	27.84
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	28.07	27.78
KRH57136	Soybean	nucleus	28.19	27.45
VIT_17s0000g09280.t01	Wine grape	nucleus	26.43	25.98

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008270	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:IPR015940	InterPro:Ig-like_fold	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569
PFAM:PF16158	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3
SMART:SM00291	SMART:SM00666	SUPFAM:SSF54277	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2D01G335900	EnsemblPlants:TraesCS2D01G335900.1
InterPro:UBA	InterPro:Znf_ZZ	TIGR:cd14319	TIGR:cd14947	SEG:seg	:

Description

No Description!

Coordinates

chr2D:-:429091333..429095989

Molecular Weight (calculated)

92132.9 Da

IEP (calculated)

5.827

GRAVY (calculated)

-0.367

Length

855 amino acids

Sequence
(BLAST)

001: MMPQQGTPPS FRGLVPLGRP RDLVIKVNYG GTLKRFSASV NGSNLDHNLA ALQSKIANAF KFSPEEQFIL TYTDEDGDVV MLDDDDDLRD AAVSQELNPL
101: RIDVQLKSST AGAPQPNQQA LNSRSKMSAA MEDQLAQVKS AIDEALKFVP EQVPAVLAKL SHELRSKAAS SAPPVRDLLD RIAKLMTPKS GMEPTSGLSD
201: SSSGSSSGNP QTFRDMKHNN ACESATVPAS HSQHAKSSRA LGLKSVLVEK TNAQVQQAPG CTSIGVPSVL VGSGGKLLYH KKRTDALSKG KSHAQSMGKS
301: VVSSSVPPVP SFAPGGSTLG SPNGYTPFGN IKKINGDSSS AFPAPRGPPP SSMPTFETIP RLPPYCSLPT HGLQKAFPPP PAYDYNQFSF SRPSAVNPYG
401: IYQDPYSFGS YSGYGIPQQS VHKWVECDGC GVTPIVGPRY KSTVKYNYDL CSACFYRMGN EAEYARMDKP LSVSERLRNL NKDKRFLQLD CRFVKDLTVP
501: DGTRMAPSTP FRKIWCMLNN GNIVWPYGTH LAWVGGDQFA RQSLVKLAIP EAGFPLNGEI DVCVDFVSPA KPGRYISYWR LTSPDLQKFG QQVWVLIEVE
601: EPVQAGDNQT AAIDLNLPAD SNPATSRPSI VQQPVQTSGN KGTAAVNFLS LPAEGSTATW TSDSASDSDN DGIPLRDVLA TLRRKGPKAV GSVVPSAPAT
701: DEPVQVPIAY PQAADEPVQV PIAYTQAADE PVQVPVAYPH ASSAEALGMP VGVAAPEAAP LPEPISVPEP LPAPTLVNSH VAPVSMPLPD QTINNNNMEE
801: KLLRELADMG FRQVDLNKEV LRQNEYDLQK SVDDLCGFHE WDPLLAELKE LGFDD

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.