Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400046377 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G24690.1 | PGSC0003DMT400046377 | AT4G29820.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08946 | Canola | plastid | 60.2 | 9.09 |
| CDY24845 | Canola | plastid | 61.22 | 8.89 |
| Bra010484.1-P | Field mustard | plastid | 61.22 | 8.8 |
| PGSC0003DMT400046670 | Potato | nucleus | 75.51 | 8.58 |
| Bra013825.1-P | Field mustard | plastid | 59.18 | 8.26 |
| CDY34302 | Canola | plastid | 59.18 | 8.26 |
| AT4G24690.1 | Thale cress | cytosol, nucleus, plastid | 59.18 | 8.24 |
| CDY03427 | Canola | cytosol | 59.18 | 8.23 |
| CDY11029 | Canola | plastid | 56.12 | 8.12 |
| PGSC0003DMT400069639 | Potato | nucleus | 60.2 | 8.03 |
| Bra019212.1-P | Field mustard | plastid | 56.12 | 7.97 |
| CDX92649 | Canola | cytosol | 55.1 | 7.81 |
| KRH57136 | Soybean | nucleus | 64.29 | 7.18 |
| Zm00001d017072_P002 | Maize | nucleus | 60.2 | 7.01 |
| Os02t0593700-01 | Rice | nucleus | 60.2 | 6.98 |
| HORVU6Hr1G053250.1 | Barley | cytosol | 60.2 | 6.87 |
| EES07083 | Sorghum | nucleus | 59.18 | 6.83 |
| GSMUA_Achr9P01840_001 | Banana | nucleus | 58.16 | 6.81 |
| TraesCS6B01G236800.1 | Wheat | cytosol | 60.2 | 6.81 |
| TraesCS6A01G208300.2 | Wheat | nucleus | 60.2 | 6.78 |
| VIT_17s0000g09280.t01 | Wine grape | nucleus | 58.16 | 6.55 |
| GSMUA_AchrUn_... | Banana | extracellular | 8.16 | 5.41 |
| TraesCS6D01G191900.3 | Wheat | nucleus | 41.84 | 4.69 |
| KXG26554 | Sorghum | nucleus | 39.8 | 4.36 |
| TraesCS2B01G355000.6 | Wheat | cytosol, nucleus, plastid | 36.73 | 4.22 |
| TraesCS2D01G335900.1 | Wheat | mitochondrion, nucleus, plastid | 36.73 | 4.21 |
| TraesCS2A01G327000.1 | Wheat | cytosol, nucleus, plastid | 35.71 | 4.09 |
| KRH03220 | Soybean | nucleus | 32.65 | 3.94 |
| HORVU2Hr1G082590.15 | Barley | nucleus | 33.67 | 3.64 |
| Os04t0476800-01 | Rice | nucleus | 32.65 | 3.63 |
| Zm00001d003300_P001 | Maize | nucleus | 27.55 | 3.61 |
| Zm00001d040272_P001 | Maize | plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400019556 | EnsemblPlantsGene:PGSC0003DMG400007563 | Gene3D:1.10.8.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016236 | GO:GO:0043130 |
| InterPro:NBR1 | InterPro:UBA-like_sf | PANTHER:PTHR20930 | PANTHER:PTHR20930:SF2 | PGSC:PGSC0003DMG400007563 | SUPFAM:SSF46934 |
| UniParc:UPI0002952F31 | UniProt:M1AC90 | MapMan:19.3.4.2 | : | : | : |
Description
TA4 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007563]
Coordinates
chr5:-:31156261..31159463
Molecular Weight (calculated)
11188.5 Da
IEP (calculated)
4.481
GRAVY (calculated)
-0.406
Length
98 amino acids
Sequence
(BLAST)
(BLAST)
1: MSAIWIFPAV YIPTSTKGPV KLDEASEDSV DLNKEILRKN EYHLEQSVDD LYGVAEWDPI LEELKEMGFC DKEMNKKLLK KNSGSIKRIV MDLIAGEQ
001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
Arabidopsis Description
NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.