CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68589
CDX85073
CDX88086
CDX88087
CDY43528

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	CDX68589	AT4G29820.1	21798944
AT4G24690.1	CDX85073	AT4G29820.1	21798944
AT4G24690.1	CDX88086	AT4G29820.1	21798944
AT4G24690.1	CDX88087	AT4G29820.1	21798944
AT4G24690.1	CDY43528	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019212.1-P	Field mustard	plastid	94.53	92.75
CDX92649	Canola	cytosol	91.29	89.44
CDY03427	Canola	cytosol	75.63	72.62
CDY34302	Canola	plastid	73.86	71.23
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	69.57	66.9
CDY08946	Canola	plastid	61.89	64.56
CDY24845	Canola	plastid	64.25	64.44
PGSC0003DMT400019556	Potato	extracellular	8.12	56.12
Solyc06g071770.2.1	Tomato	nucleus	38.4	35.28
PGSC0003DMT400069639	Potato	nucleus	38.11	35.1
PGSC0003DMT400046670	Potato	nucleus	43.43	34.11
VIT_17s0000g09280.t01	Wine grape	nucleus	43.28	33.68
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	42.54	33.33
KRH57136	Soybean	nucleus	41.65	32.12
GSMUA_AchrUn_...	Banana	extracellular	6.94	31.76
GSMUA_Achr9P01840_001	Banana	nucleus	38.85	31.42
KRH03220	Soybean	nucleus	37.22	31.03
Os02t0593700-01	Rice	nucleus	38.26	30.65
Zm00001d040272_P001	Maize	plastid	5.17	29.17
TraesCS6B01G236800.1	Wheat	cytosol	37.22	29.07
TraesCS6A01G208300.2	Wheat	nucleus	37.22	28.97
HORVU6Hr1G053250.1	Barley	cytosol	36.63	28.87
Zm00001d017072_P002	Maize	nucleus	35.75	28.74
EES07083	Sorghum	nucleus	35.75	28.5
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	34.42	27.25
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	34.12	27.05
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	33.97	26.87
TraesCS6D01G191900.3	Wheat	nucleus	34.71	26.86
Os04t0476800-01	Rice	nucleus	32.94	25.31
HORVU2Hr1G082590.15	Barley	nucleus	33.83	25.25
Zm00001d003300_P001	Maize	nucleus	27.77	25.17
KXG26554	Sorghum	nucleus	32.2	24.36

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:A0A078FDP8
UniProt:A0A078FDP8	EnsemblPlants:CDY11029	ProteinID:CDY11029	ProteinID:CDY11029.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016236	GO:GO:0043130	EnsemblPlantsGene:GSBRNA2T00048982001	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:IPR015940	InterPro:Ig-like_fold	InterPro:NBR1	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564
PFAM:PF00569	PFAM:PF16158	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930
PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EE23EB	InterPro:Znf_ZZ	SEG:seg	:

Description

BnaA03g46880DBnaA03g46880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDP8]

Coordinates

chrLK032008:+:707900..710986

Molecular Weight (calculated)

73513.0 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.269

Length

677 amino acids

Sequence
(BLAST)

001: MDSTSPLVVK VSYGGVLRRF RVPVKANGEL DLDMASLRGK IAALFNLPND GFSLTYSDED GDVVALVDDN DLFDVTSQRL KFLKINVQLN TGVTTNSIAT
101: ERSGRSSSAS GMPDSQNQVA IIQKGINDVM MAVPNPMRDT ISKVYIDLTS KAASSSPVVG ELFDCISKLG KLSISQEGTP CSPVTKPGSS VPSAGEKKDI
201: SKKSQTGKKP AIFGHVPTSM GVGASFNECP FSGYPHYPLG VCHSKKGSNG DYWTSSLGVF HKGIQCDGCE VVPIAGPRFK SKVKEDYDLC NNCFSVMGNE
301: WDYTRMDGPV SVRHLHPFGG LRAPFSNPWL GPALPPHHGV SDFRSTWTKL DSRFVLDVNV IDGTVVAPSA PFTKIWKMRN NGSLVWPRGT QIFWIGGDRF
401: SNSFAVDLQI PAEGVPINSE LDVKVDFVAP ELPGRYISYW MMASPIGVKF GQRVWVSINV DASLKGTDAN EFHGLNLNAF PDETFAREFT GTNVNHEPAQ
501: TGSSSVNGTL KGADVEREAA VPQIPGNDDL LVGDVEPVVP NTLTPSSSSA SSSCKIVGFR NMRTVEALGG GYSFTMDTPA PLQEDIEKND LETTMLKELE
601: EMGFKEIDLN KEILRDNEYN LEQSVEALCG VSEWDPILEE LQEMGFCDDV TNKRLLKKNN GSVKGVVMDL LTGDKEA

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.