Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24845 | Canola | plastid | 72.16 | 75.26 |
| CDY03427 | Canola | cytosol | 74.57 | 74.47 |
| Bra013825.1-P | Field mustard | plastid | 74.15 | 74.36 |
| Bra010484.1-P | Field mustard | plastid | 71.45 | 73.75 |
| CDY34302 | Canola | plastid | 73.44 | 73.65 |
| CDY08946 | Canola | plastid | 67.47 | 73.19 |
| Bra019212.1-P | Field mustard | plastid | 68.75 | 70.14 |
| CDY11029 | Canola | plastid | 66.9 | 69.57 |
| CDX92649 | Canola | cytosol | 67.47 | 68.74 |
| PGSC0003DMT400019556 | Potato | extracellular | 8.24 | 59.18 |
| Solyc06g071770.2.1 | Tomato | nucleus | 39.35 | 37.58 |
| PGSC0003DMT400069639 | Potato | nucleus | 39.06 | 37.41 |
| PGSC0003DMT400046670 | Potato | nucleus | 42.76 | 34.92 |
| KRH57136 | Soybean | nucleus | 42.9 | 34.4 |
| Solyc03g112230.2.1 | Tomato | cytosol, nucleus, plastid | 41.05 | 33.45 |
| KRH03220 | Soybean | nucleus | 38.07 | 33.0 |
| VIT_17s0000g09280.t01 | Wine grape | nucleus | 40.62 | 32.87 |
| GSMUA_Achr9P01840_001 | Banana | nucleus | 38.64 | 32.5 |
| GSMUA_AchrUn_... | Banana | extracellular | 6.53 | 31.08 |
| Os02t0593700-01 | Rice | nucleus | 36.08 | 30.06 |
| EES07083 | Sorghum | nucleus | 35.23 | 29.21 |
| Zm00001d017072_P002 | Maize | nucleus | 34.52 | 28.86 |
| HORVU6Hr1G053250.1 | Barley | cytosol | 34.52 | 28.29 |
| TraesCS6B01G236800.1 | Wheat | cytosol | 34.8 | 28.26 |
| TraesCS6A01G208300.2 | Wheat | nucleus | 34.52 | 27.93 |
| TraesCS2D01G335900.1 | Wheat | mitochondrion, nucleus, plastid | 32.24 | 26.55 |
| TraesCS6D01G191900.3 | Wheat | nucleus | 32.53 | 26.17 |
| TraesCS2B01G355000.6 | Wheat | cytosol, nucleus, plastid | 31.68 | 26.11 |
| TraesCS2A01G327000.1 | Wheat | cytosol, nucleus, plastid | 31.68 | 26.05 |
| Os04t0476800-01 | Rice | nucleus | 31.82 | 25.43 |
| Zm00001d003300_P001 | Maize | nucleus | 26.7 | 25.17 |
| Zm00001d040272_P001 | Maize | plastid | 4.26 | 25.0 |
| HORVU2Hr1G082590.15 | Barley | nucleus | 31.96 | 24.81 |
| KXG26554 | Sorghum | nucleus | 31.53 | 24.8 |
Protein Annotations
| Gene3D:1.10.8.10 | MapMan:19.3.4.2 | Gene3D:2.60.40.10 | Gene3D:3.10.20.90 | Gene3D:3.30.60.90 | EntrezGene:828571 |
| ProteinID:AEE84943.1 | ArrayExpress:AT4G24690 | EnsemblPlantsGene:AT4G24690 | RefSeq:AT4G24690 | TAIR:AT4G24690 | RefSeq:AT4G24690-TAIR-G |
| EnsemblPlants:AT4G24690.1 | TAIR:AT4G24690.1 | EMBL:AY062827 | EMBL:AY128759 | EMBL:AY140081 | Unigene:At.24692 |
| EMBL:BT008425 | ProteinID:CAA22994.1 | ProteinID:CAB79379.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0006914 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008270 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016043 | GO:GO:0016236 | GO:GO:0043130 | GO:GO:0046872 | GO:GO:0051258 |
| InterPro:IPR000270 | InterPro:IPR000433 | InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:NBR1 | RefSeq:NP_194200.1 |
| InterPro:N_BRCA1_central | InterPro:PB1_dom | PFAM:PF00564 | PFAM:PF00569 | PFAM:PF16158 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50135 | PANTHER:PTHR20930 | PANTHER:PTHR20930:SF2 |
| UniProt:Q9SB64 | SMART:SM00291 | SMART:SM00666 | SUPFAM:SSF46934 | SUPFAM:SSF54277 | SUPFAM:SSF57850 |
| InterPro:UBA-like_sf | UniParc:UPI00000AB17F | InterPro:Znf_ZZ | SEG:seg | : | : |
Description
NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
Coordinates
chr4:+:12741032..12744670
Molecular Weight (calculated)
76190.2 Da
IEP (calculated)
5.170
GRAVY (calculated)
-0.333
Length
704 amino acids
Sequence
(BLAST)
(BLAST)
001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.