Factsheet for VIT_17s0000g09280.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g01760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	VIT_11s0016g01760.t01	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400019556	Potato	extracellular	6.55	58.16
CDY08946	Canola	plastid	33.1	44.38
CDY11029	Canola	plastid	33.68	43.28
Bra010484.1-P	Field mustard	plastid	33.79	43.11
CDX92649	Canola	cytosol	33.79	42.55
Bra013825.1-P	Field mustard	plastid	34.25	42.45
CDY03427	Canola	cytosol	34.37	42.41
Bra019212.1-P	Field mustard	plastid	33.45	42.17
CDY34302	Canola	plastid	34.02	42.17
CDY24845	Canola	plastid	32.64	42.07
PGSC0003DMT400046670	Potato	nucleus	41.03	41.42
PGSC0003DMT400069639	Potato	nucleus	34.37	40.68
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	32.87	40.62
Solyc06g071770.2.1	Tomato	nucleus	34.02	40.16
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	38.85	39.12
KRH57136	Soybean	nucleus	36.21	35.88
KRH03220	Soybean	nucleus	32.3	34.61
GSMUA_Achr9P01840_001	Banana	nucleus	32.53	33.81
GSMUA_AchrUn_...	Banana	extracellular	5.75	33.78
Os02t0593700-01	Rice	nucleus	31.26	32.19
Zm00001d017072_P002	Maize	nucleus	29.89	30.88
EES07083	Sorghum	nucleus	29.66	30.39
Zm00001d040272_P001	Maize	plastid	4.14	30.0
HORVU6Hr1G053250.1	Barley	cytosol	28.85	29.22
TraesCS6B01G236800.1	Wheat	cytosol	28.97	29.07
TraesCS6A01G208300.2	Wheat	nucleus	28.97	28.97
TraesCS6D01G191900.3	Wheat	nucleus	27.01	26.86
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	26.21	26.7
Zm00001d003300_P001	Maize	nucleus	22.76	26.51
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	25.98	26.43
Os04t0476800-01	Rice	nucleus	26.55	26.22
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	25.75	26.17
KXG26554	Sorghum	nucleus	26.67	25.92
HORVU2Hr1G082590.15	Barley	nucleus	25.98	24.92

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:100253588	wikigene:100253588	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90
Gene3D:3.30.60.90	ProteinID:CCB42935	ProteinID:CCB42935.1	UniProt:F6GTR9	EMBL:FN594950	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0016236	GO:GO:0043130	GO:GO:0051258	InterPro:IPR000270	InterPro:IPR000433
InterPro:IPR013783	InterPro:Ig-like_fold	EntrezGene:LOC100253588	wikigene:LOC100253588	InterPro:NBR1	InterPro:N_BRCA1_central
InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50135	PFscan:PS51745
PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277
SUPFAM:SSF57850	TIGR:TC52312	TIGR:TC70645	TIGR:TC71000	InterPro:UBA-like_sf	UniParc:UPI000210808C
ArrayExpress:VIT_17s0000g09280	EnsemblPlantsGene:VIT_17s0000g09280	EnsemblPlants:VIT_17s0000g09280.t01	unigene:Vvi.3201	RefSeq:XP_002277480	RefSeq:XP_002277480.2
InterPro:Znf_ZZ	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr17:+:10869064..10874126

Molecular Weight (calculated)

95449.5 Da

IEP (calculated)

4.985

GRAVY (calculated)

-0.473

Length

870 amino acids

Sequence
(BLAST)

001: MESTKVIKVK YGNTLRRFNA CLDENGELDL DINGLRAKVI TLFNLVPDAD LTLTYIDEDG DVVTLVDDED LHDVMRQRLK FLRITVLLNI EKDGRSHTRS
101: SGSSTPMRSP FNLRPFQDGN AGVAPMRSPF DLRPFQDGNA GVAPMRPPFD LRPFQDGNAG VAEFIKSVPE PLLEAFSKLS TDFTSKAASS APVLSEVLTC
201: LSKMGESYLN SVSPSEVGAD SSTHNRSSDN SVDPLVTENT KAPQADSKQE LLPTAELKDS NSKLNEVGTT GPVSRGIASN VPATDNKEAN VESNVAPVAS
301: NDPSVDKRKE TKKESKYAPI ACSDCANDPS VDKRKETKKE SKYPPVACSD CASDGRKGTK KGSVDHYGEK LADCVASTWN AGYPRPYNPD PSHITCLDSG
401: ISKKISSDGR NYAAPNFGNP FSDCPFTGMP PVNNSLLSTG ARPRPPLFKR SYKDAMGGTF HKGIQCDGCG VHPITGPRFK SKVKEDYDLC SICFSDMGNE
501: ADYIRIDWPA RQHPWSFKMS HDPMQQPEVH SPAQPYPSIG CGIRVRQPHL DSRFILDVNV IDGTVMAPSI PFTKTWRMRN TGNAVWARGT RLVWIGGDRF
601: SEKDSVEICR DCVPIGEELE ISVDFTAPEF PGRYISYWRM AAPSGQTFGQ RVWVLIQVDS SLKDLLGDSM PVINLNFPPS SGGSKSPQII DVNVEPVVDG
701: GLVEVNEPVK PIVKEHANKN QELNFPIDDN LLATNVVPGP VSPENNSSVS YPIIDFSDAA PISGVDKAAL DQAALEEVMG KNDGVEQSLL KALDEMGFKC
801: DAFNKEILRM HEYDLEETVN HLCGVGEWDP ILEELKEMGF NDTELNKKLL RKNNGSLKRV VMDLIAVEKY

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.