Factsheet for TraesCS6A01G208300.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G328600.1
TraesCS7B01G229300.1
TraesCS7D01G325500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	TraesCS7A01G328600.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7B01G229300.1	AT4G29820.1	21798944
AT4G24690.1	TraesCS7D01G325500.1	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G053250.1	Barley	cytosol	91.03	92.2
TraesCS6B01G236800.1	Wheat	cytosol	88.16	88.47
TraesCS6D01G191900.3	Wheat	nucleus	84.83	84.34
Os02t0593700-01	Rice	nucleus	63.79	65.68
PGSC0003DMT400019556	Potato	extracellular	6.78	60.2
EES07083	Sorghum	nucleus	53.45	54.77
Zm00001d017072_P002	Maize	nucleus	52.3	54.04
Zm00001d040272_P001	Maize	plastid	5.98	43.33
GSMUA_AchrUn_...	Banana	extracellular	6.78	39.86
CDY08946	Canola	plastid	29.54	39.6
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	37.24	37.85
Bra010484.1-P	Field mustard	plastid	29.2	37.24
CDY11029	Canola	plastid	28.97	37.22
CDX92649	Canola	cytosol	29.2	36.76
Bra019212.1-P	Field mustard	plastid	29.08	36.67
CDY24845	Canola	plastid	28.39	36.59
CDY03427	Canola	cytosol	28.74	35.46
Bra013825.1-P	Field mustard	plastid	28.51	35.33
CDY34302	Canola	plastid	28.39	35.19
PGSC0003DMT400069639	Potato	nucleus	29.31	34.69
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	27.93	34.52
Solyc06g071770.2.1	Tomato	nucleus	28.97	34.19
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	32.18	32.41
PGSC0003DMT400046670	Potato	nucleus	31.61	31.9
KRH57136	Soybean	nucleus	29.77	29.5
VIT_17s0000g09280.t01	Wine grape	nucleus	28.97	28.97
KRH03220	Soybean	nucleus	26.67	28.57

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008270	InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783
InterPro:IPR015940	InterPro:Ig-like_fold	InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569
PFAM:PF16158	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3
SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6A01G208300
EnsemblPlants:TraesCS6A01G208300.2	InterPro:UBA	InterPro:UBA-like_sf	InterPro:Znf_ZZ	TIGR:cd06398	TIGR:cd14319
TIGR:cd14947	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:373992805..373997748

Molecular Weight (calculated)

95185.2 Da

IEP (calculated)

5.314

GRAVY (calculated)

-0.475

Length

870 amino acids

Sequence
(BLAST)

001: MSGLSAPPFD GLASGPDPWD VVVKVKYGDT LKRFNGYVNG THFTLNLSAL RSKIASAFKF APDADFILTY TDEDGDVVML DDDEDLHDAA IHQKLNPLRI
101: NVQLKNSHAG ASHINRQDSS PKPLEATTQD PIAQIKSVID EALKPISEPL RSTAREDPLA HLKSALDEAM KSIHEPVPES LAKLSREVLD AAPPQLTDLI
201: KPFVNLITST NSSQSAGHAE SSPGSSRGVQ QARVDLKADG QPKVEASLGS RPLNERNPVS SETGGLKSVL VEVPAAVITE ASQGHQGSLY PSVEDLLYTS
301: NSGGNSSGCK DMTDAQSKGK SVMPSAEPLA RNTVPSFRPS HPNASGNEWF QTRRSVDGWS QPRSIWQPET NVKPASDPGW RVPMYKAPHP SPPVPHAPLG
401: YGHSPQFPYP GRLLSAGRLY GNLGNNSERS PRISHRWIQC DGCGVQPIVG PRYKSNVKED YDLCDTCFCR MGSEVEYTRI DKPILPHKLS RDPNLCRKIH
501: SRAPMKSKRE KLESRFILDV TVLDGTLMSP SSPFTKIWRM HNNGSIMWPL GTQLIWVGGD QFALQTSVPL EIPLNGFPVD QEMDVAVDFV APARPGRYIS
601: YWRLASPSGQ KFGQRVWVHI QVEDPSFVSD NKTAAVNLNQ PQESNITNTS SLPQESNMTN TSNLIDVNME PANQVLDEHV NGTRMELLEP SIYREAAEPK
701: KSPSAFSAAP PYPMVDVPSS SENAAAFVPS VTVLAPEVIP RPAVTTPADV PTSSLTSIPV DLPVAATTPV DVASAPLDID SLTEEKLLQE LEEMGFKQVD
801: LNKEILRQNK YNLEQSVDDL CGVNEWDPLL AELNEMGFDD RETNKELLAK NGGSIKRAVM DLIAREKKDK

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [cytosol,nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.