Factsheet for Zm00001d040272_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d050266_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Zm00001d050266_P001	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017072_P002	Maize	nucleus	54.17	7.72
EES07083	Sorghum	nucleus	50.83	7.18
Os02t0593700-01	Rice	nucleus	45.83	6.51
Zm00001d003300_P001	Maize	nucleus	38.33	6.16
TraesCS6D01G191900.3	Wheat	nucleus	44.17	6.06
HORVU6Hr1G053250.1	Barley	cytosol	43.33	6.05
TraesCS6B01G236800.1	Wheat	cytosol	43.33	6.0
TraesCS6A01G208300.2	Wheat	nucleus	43.33	5.98
CDY08946	Canola	plastid	29.17	5.39
CDY11029	Canola	plastid	29.17	5.17
Bra019212.1-P	Field mustard	plastid	29.17	5.07
CDX92649	Canola	cytosol	29.17	5.07
Solyc06g071770.2.1	Tomato	nucleus	30.83	5.02
Bra013825.1-P	Field mustard	plastid	29.17	4.99
CDY34302	Canola	plastid	29.17	4.99
Bra010484.1-P	Field mustard	plastid	28.33	4.99
CDY03427	Canola	cytosol	29.17	4.96
PGSC0003DMT400069639	Potato	nucleus	30.0	4.9
CDY24845	Canola	plastid	27.5	4.89
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	25.0	4.26
VIT_17s0000g09280.t01	Wine grape	nucleus	30.0	4.14
PGSC0003DMT400046670	Potato	nucleus	29.17	4.06
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	29.17	4.05
KRH03220	Soybean	nucleus	25.83	3.82
KRH57136	Soybean	nucleus	26.67	3.64
GSMUA_AchrUn_...	Banana	extracellular	4.17	3.38
PGSC0003DMT400019556	Potato	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d040272_P001	EnsemblPlants:Zm00001d040272_T001	EnsemblPlantsGene:Zm00001d040272	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR000270	InterPro:PB1_dom
PANTHER:PTHR20930	PANTHER:PTHR20930:SF3	PFAM:PF00564	PFscan:PS51745	ProteinID:ONM31000.1	SEG:seg
SUPFAM:SSF54277	TMHMM:TMhelix	UniParc:UPI0004DEBCDC	UniProt:A0A1D6MPN6	MapMan:19.3.4.2	:

Description

Protein NBR1 homolog

Coordinates

chr3:+:35298875..35300319

Molecular Weight (calculated)

13587.6 Da

IEP (calculated)

10.310

GRAVY (calculated)

-0.189

Length

120 amino acids

Sequence
(BLAST)

001: MSDRSSPAAP TFFLLARRPR RGTSPSRSNM VIHLKGFMVV SMGIIFYMNL STLRARIDTA FKFGPDVDFV LTYTDEDGDI VMIDDDDDLR DAALRQKLNP
101: LRITVQLKKN QPTAKKILLP

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.