Factsheet for Bra010484.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra009744.1-P
Bra011138.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	Bra009744.1-P	AT4G29820.1	21798944
AT4G24690.1	Bra011138.1-P	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24845	Canola	plastid	92.38	93.33
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	73.75	71.45
Bra013825.1-P	Field mustard	plastid	72.87	70.8
Bra019212.1-P	Field mustard	plastid	66.57	65.8
PGSC0003DMT400019556	Potato	extracellular	8.8	61.22
Solyc06g071770.2.1	Tomato	nucleus	39.88	36.91
PGSC0003DMT400069639	Potato	nucleus	39.59	36.73
PGSC0003DMT400046670	Potato	nucleus	44.13	34.92
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	43.7	34.49
KRH57136	Soybean	nucleus	43.7	33.94
VIT_17s0000g09280.t01	Wine grape	nucleus	43.11	33.79
KRH03220	Soybean	nucleus	39.74	33.37
GSMUA_Achr9P01840_001	Banana	nucleus	38.86	31.66
GSMUA_AchrUn_...	Banana	extracellular	6.74	31.08
Os02t0593700-01	Rice	nucleus	37.98	30.65
HORVU6Hr1G053250.1	Barley	cytosol	37.24	29.57
TraesCS6A01G208300.2	Wheat	nucleus	37.24	29.2
TraesCS6B01G236800.1	Wheat	cytosol	37.1	29.18
EES07083	Sorghum	nucleus	36.07	28.98
Zm00001d017072_P002	Maize	nucleus	35.48	28.74
Zm00001d040272_P001	Maize	plastid	4.99	28.33
TraesCS6D01G191900.3	Wheat	nucleus	34.9	27.2
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	33.72	26.93
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	33.72	26.9
Zm00001d003300_P001	Maize	nucleus	29.33	26.77
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	33.28	26.52
Os04t0476800-01	Rice	nucleus	33.28	25.77
HORVU2Hr1G082590.15	Barley	nucleus	33.72	25.36
KXG26554	Sorghum	nucleus	32.7	24.92

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	EnsemblPlantsGene:Bra010484
EnsemblPlants:Bra010484.1	EnsemblPlants:Bra010484.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130
InterPro:IPR000270	InterPro:IPR000433	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4D1Y4	InterPro:NBR1
InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50135
PANTHER:PTHR20930	PANTHER:PTHR20930:SF2	SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277
SUPFAM:SSF57850	InterPro:UBA-like_sf	UniParc:UPI0002545C2C	InterPro:Znf_ZZ	SEG:seg	:

Description

AT4G24690 (E=5e-293) | ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein

Coordinates

chrA08:-:14766004..14769304

Molecular Weight (calculated)

74034.2 Da

IEP (calculated)

4.933

GRAVY (calculated)

-0.326

Length

682 amino acids

Sequence
(BLAST)

001: MDSATSLVVK VSYGGVLRRF RVSVNANGQL DLDMAVLRWK IIRLFNFPVD ADFSLTYSDE DGDVVALVDN NDLFDVTNQR LKFLKINVQS NTYSVAPEGT
101: RSSTASAMPN SLNPVSQIQK GINDETISKV YIDLASKAAS SSPVVGELFD CISKLGTLSG PQEGSLLSPV AIPVLSGPYP SREVPSFGEK KSQPGKKPVD
201: LNEPTGFAVS KTSGPVPTSS GIDASFNECP FSGSTVNRSG PNPSNFKKHA RRVCHSKKSS NGDYWTSLGV FHKGIRCDGC GVLPITGSRF KSKVKEDYDL
301: CTICFSVMGN EGDYTRMDKP ASVQHSHPFR GQLTPISNPW VGHVPQPQHG GLHLRCTRPK LDSRFVLDVN VLDGTVFAPS AQFTKIWKMR NNGSLVWPHG
401: TQIVWIGGDR LSNSLSVDLQ IPAEGAPIDS ELDVKVDFVA PELPGRYISY WRMASSSGAK FGQRVWVLIH VDASLENFVV NKFHGLNLNA SPDENSSSEF
501: TGINHKPTQA GSSSVNSEVV KGADLEGEAA GSKVPEKDDL PVGEAEPATL SPSSSSSSFN MIEFPNMPAV EALGGGSSST KDIPVDLQED IEKNDVEITM
601: LKELEEMGFK EIDLNKEILR ENEYDLEQSV DALCGVSEWD PILEELQEMG FCDDVTNKKL LKKNNGSIKG VVMDLLTGEK EA

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.