CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU80396

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	OQU80396	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003300_P001	Maize	nucleus	49.83	59.71
Os04t0476800-01	Rice	nucleus	41.01	41.66
PGSC0003DMT400019556	Potato	extracellular	4.36	39.8
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	37.88	39.7
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	37.32	39.02
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	36.54	38.25
GSMUA_AchrUn_...	Banana	extracellular	6.26	37.84
EES07083	Sorghum	nucleus	35.87	37.81
HORVU2Hr1G082590.15	Barley	nucleus	37.09	36.6
CDY08946	Canola	plastid	25.03	34.51
Bra010484.1-P	Field mustard	plastid	24.92	32.7
CDY11029	Canola	plastid	24.36	32.2
CDY34302	Canola	plastid	25.14	32.05
Bra019212.1-P	Field mustard	plastid	24.58	31.88
CDY24845	Canola	plastid	24.02	31.85
CDY03427	Canola	cytosol	25.03	31.77
CDX92649	Canola	cytosol	24.47	31.69
PGSC0003DMT400069639	Potato	nucleus	25.92	31.56
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	24.8	31.53
Solyc06g071770.2.1	Tomato	nucleus	25.81	31.34
Bra013825.1-P	Field mustard	plastid	24.58	31.34
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	26.26	27.2
VIT_17s0000g09280.t01	Wine grape	nucleus	25.92	26.67
PGSC0003DMT400046670	Potato	nucleus	25.59	26.57
KRH03220	Soybean	nucleus	23.35	25.74
KRH57136	Soybean	nucleus	24.92	25.4

Protein Annotations

Gene3D:1.10.8.10	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90	UniProt:A0A1B6PLL0
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008270	InterPro:IPR000270	InterPro:IPR000433
InterPro:IPR013783	InterPro:IPR015940	InterPro:Ig-like_fold	EnsemblPlants:KXG26554	ProteinID:KXG26554	ProteinID:KXG26554.1
InterPro:N_BRCA1_central	InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	PFscan:PS50030
PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF3	SMART:SM00291	SMART:SM00666
EnsemblPlantsGene:SORBI_3006G119900	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA	UniParc:UPI00081ABEFA	InterPro:Znf_ZZ
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:48667376..48671449

Molecular Weight (calculated)

97384.2 Da

IEP (calculated)

6.190

GRAVY (calculated)

-0.372

Length

895 amino acids

Sequence
(BLAST)

001: MDARRYHQRY PQPYGWPRVD AWDLVVKVKY GDTLKRFNAS VNGSHFDHDL PALRLKIASA FKFSPDTEFI LTYTDEDGDD VMLDDDNDLR DAAVNQKLNP
101: LRIIVQLKGS NVGAARTKQH TTDSISPRST SLEDQLAQVK SAIDEALKFV PEQIPAVIAK LSHDLRSRAA LSAPSLAELL DRFAKLMARS SSMQPSGGSG
201: VSSQNLGNSK AKLESAPMTI SAPEPSDMQN SGTLENGLKS VLLENPTAKI DQVSLCPSVE DSLVFTSLGG MKSELKRSAD NEIKTKSNAY SKGKSVISSV
301: PPASTTSHGA PTQRPVPVPS MRESKLIYGT NPTYTSCGSN GTTNGALRSL FPPPPVFHPR SPVFPPYNPI FGTNGKTSDM LSTFSPPPNI YGPFEYTPSS
401: VGMCFPKPYP IGSSHDRMAS LHCNNVPNPE EKSFGSSYRG LGANYGSIPQ HEQHRWVQCD GCGVTPIVGP RYKSNVKEDY DLCGACFSHV VNEAEYTRLD
501: SPASRCNIKI LERVPAAKPN SLFIKDITIP DGTPMPPSHP FIKIWRVLNN GSTRWPYGTQ LVWVGGDHLT SPSSVRLAIS VNGRINPLEE TDVTVDFLAP
601: ARPGRYISYW RLALPSGQRF GQRIWVHIKV EQPIQSTGGK QAAAMNLNQL PEANSRKLKP FTVDLETNSV SSEPFYGCHG IPEANSTKLK PLTLDLETNS
701: VSSEPLSRCP GSFLRTMKLK ESKPAPCDVS SVPTTVELVQ IPATDVSAES LLASIPGGVP AFEASPLPNP VPMLPVSSSA PVVGHVSMPA PAATIAPVPA
801: APLPEQIINH LEEKLMTELE GLGFMQADLN KQILRQNNYN LEQSVAHLCD YDEWDALEFS ELGFDDAEMN KEVVDNSDEE GFIVADLVTK AANDH

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.