Factsheet for PGSC0003DMT400046670

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400046377

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24690.1	PGSC0003DMT400046377	AT4G29820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112230.2.1	Tomato	cytosol, nucleus, plastid	81.55	81.37
PGSC0003DMT400019556	Potato	extracellular	8.58	75.51
PGSC0003DMT400069639	Potato	nucleus	43.74	51.29
CDY08946	Canola	plastid	34.8	46.23
Bra013825.1-P	Field mustard	plastid	36.43	44.73
CDY24845	Canola	plastid	34.92	44.59
CDY03427	Canola	cytosol	36.19	44.26
Bra010484.1-P	Field mustard	plastid	34.92	44.13
CDY34302	Canola	plastid	35.73	43.87
CDY11029	Canola	plastid	34.11	43.43
CDX92649	Canola	cytosol	34.8	43.42
AT4G24690.1	Thale cress	cytosol, nucleus, plastid	34.92	42.76
Bra019212.1-P	Field mustard	plastid	33.99	42.46
VIT_17s0000g09280.t01	Wine grape	nucleus	41.42	41.03
GSMUA_AchrUn_...	Banana	extracellular	6.61	38.51
KRH57136	Soybean	nucleus	38.52	37.81
KRH03220	Soybean	nucleus	34.34	36.45
GSMUA_Achr9P01840_001	Banana	nucleus	34.57	35.6
Os02t0593700-01	Rice	nucleus	33.87	34.56
HORVU6Hr1G053250.1	Barley	cytosol	31.55	31.66
TraesCS6A01G208300.2	Wheat	nucleus	31.9	31.61
Zm00001d017072_P002	Maize	nucleus	30.86	31.59
TraesCS6B01G236800.1	Wheat	cytosol	31.67	31.49
EES07083	Sorghum	nucleus	30.97	31.45
TraesCS6D01G191900.3	Wheat	nucleus	30.16	29.71
Zm00001d040272_P001	Maize	plastid	4.06	29.17
TraesCS2B01G355000.6	Wheat	cytosol, nucleus, plastid	28.07	28.34
TraesCS2D01G335900.1	Wheat	mitochondrion, nucleus, plastid	27.84	28.07
TraesCS2A01G327000.1	Wheat	cytosol, nucleus, plastid	27.73	27.92
HORVU2Hr1G082590.15	Barley	nucleus	28.65	27.23
Os04t0476800-01	Rice	nucleus	27.38	26.79
Zm00001d003300_P001	Maize	nucleus	22.85	26.37
KXG26554	Sorghum	nucleus	26.57	25.59

Protein Annotations

Gene3D:1.10.8.10	EntrezGene:102582603	MapMan:19.3.4.2	Gene3D:2.60.40.10	Gene3D:3.10.20.90	Gene3D:3.30.60.90
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009056	GO:GO:0009987	GO:GO:0016236	GO:GO:0043130	InterPro:IPR000270	InterPro:IPR000433
InterPro:IPR013783	InterPro:IPR015940	InterPro:Ig-like_fold	UniProt:M1BJF6	InterPro:NBR1	InterPro:N_BRCA1_central
InterPro:PB1_dom	PFAM:PF00564	PFAM:PF00569	PFAM:PF16158	EnsemblPlantsGene:PGSC0003DMG400018122	PGSC:PGSC0003DMG400018122
EnsemblPlants:PGSC0003DMT400046670	PFscan:PS50030	PFscan:PS50135	PFscan:PS51745	PANTHER:PTHR20930	PANTHER:PTHR20930:SF2
SMART:SM00291	SMART:SM00666	SUPFAM:SSF46934	SUPFAM:SSF54277	SUPFAM:SSF57850	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI000294F8E5	RefSeq:XP_006344472.1	RefSeq:XP_015162877.1	InterPro:Znf_ZZ	SEG:seg

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018122]

Coordinates

chr3:-:52021801..52026137

Molecular Weight (calculated)

93982.3 Da

IEP (calculated)

5.512

GRAVY (calculated)

-0.423

Length

862 amino acids

Sequence
(BLAST)

001: MAMESSIVIK VKYEETLRRF NACVINEKLD LDIGGLRDKI IQLFNFAHDA ELTLTYIDED GDVVTLVDDE DLQDVMRQDL NPLRISARLN AGERSGRASA
101: RSSGNSTPLR SPRVQPPFLN LNSRVSDVLK YIPEPLRESV MKVCSDMTAS ASSSAPILAE LVDAMSEMGL SYYQNQASGS QAVKEAGSCS GISKGNTKSA
201: DGGMPNVKIG ESSPKKNRPL TALHGEPKPN ASNEAVDASV KLVCKSETLE GDRTEDLSSS FKGSKAQTSL VNSLEKDKKF DVRSLDGRTI GYAYVRNSPI
301: PPEKTSDEQP SKGHPVAKPV DLGGSASSSK VKQCNWDSPN ADSSGSSINM PYDGFTPSGL VHLNTVNVND SHNAGSSGSS MKMPYDGFRP AVRHLGPLIP
401: VNACPFSGVP TVNNPIPPQN FSFEVPLKRS HNHSDGTGTI FHKGVRCDGC GVHPITGPRF ISKVKENYDL CSICFAEMGN DADYIRMDRP LTYPNPWSFK
501: SLHDLHGRLR PRPPTVPQVI RGFGLKAGRP KLDSRFIQDV NVLDGTIMAP LTRFTKIWRM KNNGNLVWPQ GTQLVWIGGD KLSDRFSVEL EITTAGLAVD
601: QELDVAVDFT APEHPGRYIS YWRLASASGQ KFGQRVWVLI QVDALLSVPK KGLVHEAFQG LNLNLPPAGS GVSGPDIINV NSEPQNVLPE PKSSSTMELV
701: DSVAEVNQNK EQEAKFPIND SLLVGFGDKS SSPSASGSPI SYPVIDLTEK PSADSSMQPS AAVAMQAPLQ DARGNFEVEM SLLQELEEMG FKQVDLNKEI
801: LRKNEYDLEQ SVDDLCGVAE WDPILEELKE MGFCDKEMNK KLLKKNNGSI KRVVMDLIAG EQ

Best Arabidopsis Sequence Match ( AT4G24690.1 )
(BLAST)

001: MESTANALVV KVSYGGVLRR FRVPVKANGQ LDLEMAGLKE KIAALFNLSA DAELSLTYSD EDGDVVALVD DNDLFDVTNQ RLKFLKINVN AGVSTNSAAP
101: ESSGSSTPAG MPNPVSKIQK GINDVLMAVP NPMRDTISKV YMDLASKAST SSPVVGEMLD CISKLGQLSI PQESSPCSPV TKPGSSGASL SRDVPSAGGK
201: KDISERTQTG RKPVNLNEPT GAHSKTSGHV PNSSGLGANF NECPFSGSTM NYSCPNPVNL NKHPRRVCHS KKSTNGDYWT SLGVFHKGIR CDGCGVLPIT
301: GPRFKSKVKE DYDLCTICYS VMGNEGDYTR MDKPVSVQHL HPFRGPFTQF PNPWLSHPVP RATNGGAPLR CTRPKLDSRF VLDVNVIDGT VVAPSAPFTK
401: IWKMRNSGSL VWPQGTQIVW IGGDRFCNSL SVDLQIPKEG VPIYSELDVK VDFVAPELPG RYISYWRMAT SDGAKFGQRV WVLIHVDASL KNSVVNEFHG
501: LNLNASPSLD ENFPSEFLGI MNYESAQPGS SSVNPGTVKG TDLEGEVGET QAVEKENLLV GEAHPAIPHG HSPSSSSSSF NMVDFPSMPA VEVLSGGSSS
601: TTKDVPVPLQ EDIEKNDVEI TMLKELEEMG FKEIDLNKEI LRDNEYNLEQ SVDALCGVSE WDPILEELQE MGFCDDVTNK RLLKKNNGSI KGVVMDLLTG
701: EKEA

Arabidopsis Description

NBR1Protein NBR1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9SB64]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.